Os03g0636800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Serine/threonine protein kinase domain containing protein.
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Os03g0636800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Serine/threonine protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.43 | 0.615 | 3.32 | 0.0254 | 0.118 | -0.26 | -0.323 | -2.02 | -0.0924 | 10.6 | 28.14 | 9167 | -- | -- |
| 177.27 | 0.62 | 3.29 | -0.14 | 0.107 | -0.217 | -0.328 | -- | -0.0829 | 10.3 | 30.6 | 10620 | -- | -- |
| 171.86 | 0.611 | 3.32 | 0.0255 | 0.117 | -0.261 | -- | -2.02 | -0.093 | 10.7 | 28.13 | 9169 | -- | -- |
| 177.24 | 0.62 | 3.3 | -0.211 | 0.138 | -0.272 | -- | -- | -0.138 | 10.8 | 30.04 | 10630 | -- | -- |
| 172.74 | 0.612 | 3.32 | 0.0248 | -- | -0.261 | -- | -2.02 | -0.0925 | -- | 28.14 | 9169 | -- | -- |
| 179.84 | 0.629 | 3.28 | -0.217 | 0.107 | -- | -0.311 | -- | -0.0548 | 10.3 | -- | -- | -- | -- |
| 180.22 | 0.629 | 3.28 | -0.228 | 0.108 | -- | -- | -- | -0.0551 | 11 | -- | -- | -- | -- |
| 176.69 | 0.619 | 3.28 | -0.0626 | -- | -0.275 | -- | -- | -0.0779 | -- | 50.03 | 1884 | -- | -- |
| 178.5 | 0.622 | 3.29 | -- | 0.128 | -0.277 | -- | -- | -0.118 | 10.7 | 30.07 | 10616 | -- | -- |
| 180.95 | 0.629 | 3.28 | -0.231 | -- | -- | -- | -- | -0.0559 | -- | -- | -- | -- | -- |
| 181.59 | 0.63 | 3.27 | -- | 0.11 | -- | -- | -- | -0.0297 | 11.1 | -- | -- | -- | -- |
| 176.18 | 0.618 | 3.26 | -- | -- | -0.456 | -- | -- | -0.0448 | -- | 53.46 | 1826 | -- | -- |
| 182.35 | 0.63 | 3.28 | -- | -- | -- | -- | -- | -0.0303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.84 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 170.00 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 3 | 170.05 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 4 | 170.05 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 5 | 170.05 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 49 | 170.28 | wind | 7.0 | 30 | > th | dose independent | rect. | 17 | 3 |
| 57 | 170.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 76 | 170.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 86 | 170.44 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 90 | 170.45 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 99 | 170.48 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 114 | 170.55 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 127 | 170.58 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 128 | 170.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 137 | 170.61 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 163 | 170.64 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 207 | 170.72 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 9 |
| 215 | 170.74 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 216 | 170.74 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 287 | 170.81 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 12 |
| 323 | 170.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 324 | 170.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 330 | 170.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 11 |
| 369 | 170.88 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 391 | 170.89 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 418 | 170.91 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 450 | 170.93 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 6 |
| 454 | 170.93 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 6 | 22 |
| 463 | 170.94 | atmosphere | 1000.0 | 43200 | < th | dose dependent | no | NA | NA |
| 552 | 171.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 582 | 171.03 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 584 | 171.03 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 614 | 171.06 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 615 | 171.06 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 630 | 171.07 | wind | 7.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 643 | 171.08 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 644 | 171.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 657 | 171.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 680 | 171.11 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 736 | 171.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 738 | 171.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 757 | 171.16 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 841 | 171.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 846 | 171.20 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 20 | NA |
| 847 | 171.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 850 | 171.21 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 855 | 171.21 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 860 | 171.21 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 861 | 171.21 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 863 | 171.21 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 872 | 171.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | no | NA | NA |
| 873 | 171.22 | atmosphere | 1000.0 | 43200 | < th | dose independent | no | NA | NA |
| 877 | 171.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 881 | 171.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 882 | 171.22 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 941 | 171.24 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 995 | 171.26 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 20 |