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Os03g0634000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to THA4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0211) R2 : 0.878
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.9 (0.071) R2dC : 0.323 R2C : 0.647
β3 : -1.71 (0.0806) R2dE : 0.205 R2E : 0.535
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.28 (0.0447) R2dN8 : 0.0138 R2N8 : 0.025
σ : 0.394
deviance : 71.58
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_____
C
peak time of C : 17.4
E
wheather : temperature
threshold : 14.01
memory length : 39
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.87
open length of G : 3.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.11 0.388 14.1 -0.148 1.92 -1.7 0.247 -1.67 -0.307 17.4 14.44 35 3.93 3.93
69.92 0.389 14.1 -0.0381 1.91 -1.7 0.831 -- -0.302 17.4 13.86 37 3.88 3.97
68.1 0.384 14.1 -0.164 1.92 -1.7 -- -1.84 -0.316 17.4 14.34 38 3.88 3.93
71.57 0.394 14.1 -0.0294 1.9 -1.7 -- -- -0.285 17.4 13.62 39 3.88 3.97
171.28 0.613 14.1 -0.072 -- -2.8 -- -1.14 -0.425 -- 4.948 34 3.7 5.03
137.79 0.55 14.1 -0.104 2.86 -- 1.03 -- -0.437 17.6 -- -- -- --
140.38 0.555 14.1 -0.109 2.87 -- -- -- -0.433 17.6 -- -- -- --
145 0.561 14 -0.257 -- -3.29 -- -- -0.255 -- 10.5 145 2.44 5.57
71.58 0.394 14.1 -- 1.9 -1.71 -- -- -0.28 17.4 14.01 39 3.87 3.98
567.98 1.11 14.1 -0.202 -- -- -- -- -0.502 -- -- -- -- --
140.69 0.555 14.1 -- 2.87 -- -- -- -0.421 17.6 -- -- -- --
108.58 0.485 14 -- -- -3.1 -- -- -0.2 -- -2.012 313 0.317 6.23
569.05 1.11 14.1 -- -- -- -- -- -0.479 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.70 temperature 15.0 30 > th dose dependent rect. 4 4
3 71.88 temperature 10.0 270 > th dose dependent rect. 2 4
12 74.20 wind 7.0 270 < th dose dependent rect. 2 4
18 74.68 wind 9.0 30 < th dose dependent rect. 4 4
27 75.89 temperature 20.0 30 > th dose independent rect. 4 4
32 76.26 wind 3.0 270 < th dose independent rect. 2 4
33 76.33 wind 5.0 30 < th dose independent rect. 4 4
36 76.53 wind 9.0 30 < th dose independent rect. 8 20
40 76.70 precipitation 0.1 30 < th dose independent rect. 4 4
41 76.70 precipitation 0.1 30 < th dose dependent rect. 4 4
45 76.84 precipitation 0.1 270 < th dose independent rect. 3 2
46 76.84 precipitation 0.1 270 < th dose dependent rect. 3 2
50 76.90 temperature 10.0 30 > th dose independent rect. 4 4
52 76.90 temperature 30.0 30 < th dose independent rect. 4 4
53 76.90 humidity 50.0 30 > th dose independent rect. 4 4
55 76.90 atmosphere 995.0 30 > th dose independent rect. 4 4
56 76.90 atmosphere 1015.0 30 < th dose independent rect. 4 4
57 76.90 temperature 10.0 30 > th dose independent rect. 8 20
59 77.01 radiation 40.0 30 < th dose independent rect. 4 4
61 77.06 wind 9.0 270 < th dose independent rect. 5 22
66 77.20 precipitation 0.1 270 < th dose independent rect. 2 4
67 77.20 precipitation 0.1 270 < th dose dependent rect. 2 4
70 77.48 wind 9.0 270 < th dose independent rect. 6 20
72 77.49 humidity 50.0 270 > th dose dependent rect. 3 2
73 77.59 precipitation 0.1 30 < th dose independent rect. 8 20
74 77.59 precipitation 0.1 30 < th dose dependent rect. 8 20
79 77.79 humidity 50.0 270 > th dose dependent rect. 2 4
80 77.80 wind 7.0 270 < th dose independent rect. 3 2
86 78.06 radiation 1.0 270 < th dose independent rect. 3 2
90 78.09 temperature 10.0 270 > th dose independent rect. 3 2
92 78.09 temperature 30.0 270 < th dose independent rect. 3 2
93 78.09 humidity 50.0 270 > th dose independent rect. 3 2
96 78.09 atmosphere 995.0 270 > th dose independent rect. 3 2
97 78.09 atmosphere 1010.0 270 < th dose independent rect. 3 2
103 78.09 temperature 10.0 270 > th dose independent rect. 5 22
104 78.09 radiation 20.0 270 < th dose dependent rect. 3 2
109 78.17 radiation 10.0 270 < th dose independent rect. 2 4
115 78.36 temperature 10.0 270 > th dose independent rect. 2 4
117 78.36 temperature 30.0 270 < th dose independent rect. 2 4
118 78.36 humidity 50.0 270 > th dose independent rect. 2 4
121 78.36 atmosphere 995.0 270 > th dose independent rect. 2 4
122 78.36 atmosphere 1015.0 270 < th dose independent rect. 2 4
126 78.36 temperature 10.0 270 > th dose independent rect. 6 20
139 78.83 radiation 40.0 270 < th dose dependent rect. 2 4
144 78.93 precipitation 0.1 270 < th dose independent rect. 6 20
145 78.93 precipitation 0.1 270 < th dose dependent rect. 6 20
215 80.41 humidity 50.0 30 > th dose dependent rect. 4 4
229 80.79 precipitation 0.1 270 < th dose independent rect. 5 22
230 80.79 precipitation 0.1 270 < th dose dependent rect. 5 22
292 81.61 atmosphere 995.0 30 > th dose independent rect. 8 20
307 81.88 atmosphere 1015.0 30 < th dose dependent rect. 4 4
321 82.14 wind 9.0 270 < th dose independent rect. 6 9
360 82.64 precipitation 0.1 270 < th dose independent rect. 6 9
361 82.64 precipitation 0.1 270 < th dose dependent rect. 6 9
372 82.83 temperature 10.0 270 > th dose independent rect. 6 9
373 82.83 atmosphere 1015.0 270 < th dose independent rect. 6 9
374 82.83 temperature 10.0 270 > th dose independent rect. 15 15
388 83.01 radiation 40.0 270 < th dose independent rect. 15 15
417 83.63 atmosphere 995.0 270 > th dose independent rect. 6 9
429 83.85 atmosphere 1015.0 270 < th dose dependent rect. 3 2
431 83.87 wind 9.0 270 < th dose independent rect. 15 15
442 84.26 humidity 50.0 30 > th dose independent rect. 8 20
471 84.76 humidity 50.0 270 > th dose independent rect. 6 9
477 84.87 atmosphere 995.0 270 > th dose independent rect. 15 15
488 85.00 atmosphere 1015.0 30 < th dose independent rect. 8 20
491 85.09 precipitation 0.1 270 < th dose independent rect. 15 15
493 85.09 precipitation 0.1 270 < th dose dependent rect. 15 15
522 85.31 wind 1.0 270 > th dose independent rect. 6 9
542 85.49 wind 7.0 270 < th dose independent rect. 19 7
564 85.79 precipitation 0.1 270 < th dose independent rect. 19 7
565 85.79 precipitation 0.1 270 < th dose independent rect. 2 17
566 85.79 precipitation 0.1 270 < th dose dependent rect. 19 7
567 85.79 precipitation 0.1 270 < th dose dependent rect. 2 17
571 85.98 radiation 40.0 270 < th dose dependent rect. 15 15
583 86.15 temperature 10.0 270 > th dose independent rect. 19 7
584 86.15 temperature 30.0 270 < th dose independent rect. 19 7
585 86.15 humidity 50.0 270 > th dose independent rect. 19 7
587 86.15 atmosphere 995.0 270 > th dose independent rect. 19 7
588 86.15 radiation 1.0 270 < th dose independent rect. 19 7
593 86.15 temperature 10.0 270 > th dose independent rect. 2 17
594 86.15 atmosphere 1015.0 270 < th dose independent rect. 2 17
597 86.15 radiation 1.0 270 < th dose dependent rect. 19 7
636 86.79 wind 1.0 270 > th dose independent rect. 6 20
676 87.55 atmosphere 995.0 270 > th dose independent rect. 2 17
677 87.56 wind 9.0 270 < th dose independent rect. 2 17
706 87.96 humidity 50.0 270 > th dose independent rect. 6 20
713 88.12 wind 9.0 1440 < th dose independent rect. 5 4
714 88.12 temperature 10.0 1440 > th dose independent rect. 5 4
717 88.12 humidity 50.0 1440 > th dose independent rect. 5 4
719 88.12 atmosphere 995.0 1440 > th dose independent rect. 5 4
720 88.12 atmosphere 1015.0 1440 < th dose independent rect. 5 4
723 88.12 temperature 10.0 1440 > th dose independent rect. 9 20
728 88.17 atmosphere 995.0 30 > th dose dependent rect. 4 4
769 88.58 temperature 10.0 30 > th dose dependent rect. 8 20
798 88.79 wind 1.0 270 > th dose independent rect. 7 18
824 88.90 wind 7.0 90 < th dose independent rect. 21 7
831 89.09 temperature 10.0 270 > th dose dependent rect. 6 7
842 89.21 radiation 1.0 90 < th dose dependent rect. 21 7
843 89.22 temperature 10.0 90 > th dose independent rect. 21 7
844 89.22 temperature 30.0 90 < th dose independent rect. 21 7
845 89.22 humidity 50.0 90 > th dose independent rect. 21 7
848 89.22 atmosphere 995.0 90 > th dose independent rect. 21 7
849 89.22 radiation 1.0 90 < th dose independent rect. 21 7
854 89.22 temperature 10.0 90 > th dose independent rect. 4 17
855 89.22 atmosphere 1015.0 90 < th dose independent rect. 4 17
860 89.23 precipitation 0.1 90 < th dose independent rect. 21 7
861 89.23 precipitation 0.1 90 < th dose dependent rect. 21 7
872 89.31 wind 1.0 30 > th dose independent rect. 8 20
883 89.38 radiation 1.0 10 > th dose independent rect. 5 3
931 89.70 atmosphere 1015.0 270 < th dose independent rect. 6 20
932 89.73 radiation 1.0 270 < th dose dependent rect. 3 14
952 89.89 humidity 50.0 270 > th dose independent rect. 21 14
984 90.03 radiation 1.0 270 < th dose dependent rect. 2 17