Os03g0629900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0629900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.74 | 0.389 | 7.33 | -1.95 | 0.14 | -0.647 | 0.715 | 1.55 | -0.796 | 23.9 | 20 | 1442 | -- | -- |
| 75.89 | 0.406 | 7.33 | -1.95 | 0.137 | -0.644 | 0.613 | -- | -0.794 | 23.7 | 19.98 | 1440 | -- | -- |
| 71.96 | 0.395 | 7.33 | -1.95 | 0.14 | -0.647 | -- | 1.55 | -0.796 | 23.9 | 20 | 1442 | -- | -- |
| 77.5 | 0.41 | 7.34 | -1.91 | 0.139 | -0.645 | -- | -- | -0.799 | 0.398 | 19.99 | 1432 | -- | -- |
| 73.17 | 0.398 | 7.33 | -1.95 | -- | -0.647 | -- | 1.55 | -0.796 | -- | 20 | 1442 | -- | -- |
| 89.78 | 0.444 | 7.29 | -1.79 | 0.164 | -- | 0.762 | -- | -0.616 | 0.0995 | -- | -- | -- | -- |
| 92.28 | 0.45 | 7.29 | -1.82 | 0.163 | -- | -- | -- | -0.62 | 0.553 | -- | -- | -- | -- |
| 77.93 | 0.411 | 7.34 | -1.88 | -- | -0.654 | -- | -- | -0.795 | -- | 20 | 1383 | -- | -- |
| 157.85 | 0.585 | 7.31 | -- | 0.0527 | -0.548 | -- | -- | -0.605 | 13.8 | 9.901 | 5679 | -- | -- |
| 93.94 | 0.453 | 7.29 | -1.81 | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
| 179.28 | 0.626 | 7.25 | -- | 0.137 | -- | -- | -- | -0.417 | 23.9 | -- | -- | -- | -- |
| 145.5 | 0.562 | 7.31 | -- | -- | -0.55 | -- | -- | -0.606 | -- | 9.99 | 27280 | -- | -- |
| 180.47 | 0.627 | 7.25 | -- | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 2 | 69.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 5 | 69.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 12 | 69.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 18 | 69.33 | radiation | 20 | 1440 | < th | dose independent | sin | 20 | NA |
| 54 | 69.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 58 | 69.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 61 | 69.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 89 | 69.74 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 90 | 69.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 118 | 69.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 167 | 69.86 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 170 | 69.96 | radiation | 30 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 195 | 70.23 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 222 | 70.37 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 382 | 70.58 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 400 | 70.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 413 | 70.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 415 | 70.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 417 | 70.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 424 | 70.90 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 427 | 70.91 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 428 | 70.91 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 437 | 71.00 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 438 | 71.01 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 443 | 71.03 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 455 | 71.09 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 459 | 71.10 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 462 | 71.10 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 464 | 71.11 | radiation | 30 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 468 | 71.11 | radiation | 30 | 1440 | < th | dose dependent | rect. | 21 | 20 |
| 474 | 71.12 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 480 | 71.13 | radiation | 1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 486 | 71.13 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 495 | 71.14 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 508 | 71.15 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 511 | 71.15 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 578 | 71.16 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 581 | 71.16 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 628 | 71.17 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 663 | 71.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 9 |