Os03g0627500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os03g0627500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.72 | 0.198 | 10.5 | 0.462 | 0.217 | -0.27 | 0.0244 | -1.01 | 0.242 | 11.2 | 0.6033 | 4214 | -- | -- |
| 18.61 | 0.201 | 10.5 | 0.465 | 0.231 | -0.3 | 0.0162 | -- | 0.26 | 11.4 | 0.3795 | 5644 | -- | -- |
| 17.63 | 0.196 | 10.5 | 0.457 | 0.22 | -0.287 | -- | -1.01 | 0.242 | 11 | 0.4992 | 4657 | -- | -- |
| 18.59 | 0.201 | 10.5 | 0.474 | 0.225 | -0.317 | -- | -- | 0.258 | 11.4 | 0.4 | 5558 | -- | -- |
| 20.56 | 0.211 | 10.5 | 0.46 | -- | -0.282 | -- | -0.986 | 0.243 | -- | 0.5 | 4496 | -- | -- |
| 20.53 | 0.212 | 10.5 | 0.37 | 0.202 | -- | -0.0263 | -- | 0.294 | 11.2 | -- | -- | -- | -- |
| 20.53 | 0.212 | 10.5 | 0.369 | 0.202 | -- | -- | -- | 0.294 | 11.2 | -- | -- | -- | -- |
| 21.45 | 0.216 | 10.5 | 0.464 | -- | -0.313 | -- | -- | 0.252 | -- | 0.002377 | 4477 | -- | -- |
| 23.58 | 0.226 | 10.5 | -- | 0.212 | -0.166 | -- | -- | 0.214 | 10.7 | 0.6 | 4664 | -- | -- |
| 23.09 | 0.225 | 10.5 | 0.364 | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
| 24.11 | 0.23 | 10.5 | -- | 0.199 | -- | -- | -- | 0.253 | 11.1 | -- | -- | -- | -- |
| 26.2 | 0.238 | 10.5 | -- | -- | -0.146 | -- | -- | 0.228 | -- | 0.6 | 4605 | -- | -- |
| 26.58 | 0.241 | 10.5 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.12 | wind | 5 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 2 | 17.15 | wind | 5 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 14 | 17.28 | wind | 1 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 22 | 17.31 | wind | 1 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 23 | 17.32 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 25 | 17.33 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 34 | 17.35 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 44 | 17.38 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 67 | 17.45 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 90 | 17.50 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 144 | 17.60 | wind | 5 | 14400 | < th | dose dependent | sin | 12 | NA |
| 181 | 17.66 | wind | 5 | 14400 | < th | dose dependent | rect. | 19 | 18 |
| 186 | 17.67 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 215 | 17.71 | wind | 3 | 14400 | < th | dose independent | sin | 12 | NA |
| 239 | 17.73 | wind | 3 | 14400 | > th | dose independent | sin | 12 | NA |
| 247 | 17.73 | wind | 1 | 4320 | < th | dose dependent | rect. | 14 | 19 |
| 248 | 17.73 | wind | 1 | 4320 | < th | dose dependent | rect. | 14 | 22 |
| 249 | 17.74 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 258 | 17.74 | wind | 1 | 14400 | > th | dose dependent | rect. | 19 | 18 |
| 261 | 17.75 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 6 |
| 268 | 17.75 | wind | 1 | 4320 | < th | dose dependent | rect. | 1 | 11 |
| 295 | 17.77 | wind | 1 | 14400 | > th | dose dependent | sin | 11 | NA |
| 328 | 17.79 | wind | 1 | 4320 | > th | dose independent | rect. | 20 | 13 |
| 330 | 17.79 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 331 | 17.79 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 346 | 17.80 | wind | 1 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 366 | 17.81 | wind | 1 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 385 | 17.82 | wind | 1 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 399 | 17.82 | wind | 1 | 4320 | < th | dose dependent | rect. | 1 | 8 |
| 444 | 17.84 | wind | 1 | 4320 | < th | dose dependent | sin | 7 | NA |
| 506 | 17.87 | wind | 1 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 568 | 17.89 | wind | 1 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 603 | 17.90 | wind | 1 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 630 | 17.91 | wind | 1 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 641 | 17.91 | wind | 1 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 642 | 17.92 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 701 | 17.94 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 716 | 17.94 | wind | 1 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 746 | 17.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 762 | 17.96 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 763 | 17.96 | wind | 1 | 4320 | > th | dose independent | rect. | 3 | 9 |
| 785 | 17.96 | wind | 1 | 4320 | < th | dose dependent | rect. | 20 | 21 |
| 787 | 17.97 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 909 | 18.00 | wind | 1 | 4320 | < th | dose dependent | rect. | 11 | 22 |
| 943 | 18.01 | wind | 1 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 948 | 18.02 | wind | 1 | 4320 | < th | dose independent | rect. | 1 | 11 |