Os03g0626700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0626700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Multi antimicrobial extrusion protein MatE family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.89 | 0.747 | 7.52 | 1.74 | 3.42 | 0.289 | 0.49 | 3.52 | 0.527 | 8.68 | 24.5 | 412 | -- | -- |
| 286.56 | 0.788 | 7.4 | 2.79 | 3.28 | 0.429 | 1.13 | -- | 0.786 | 8.66 | 24.9 | 491 | -- | -- |
| 253.44 | 0.741 | 7.53 | 1.69 | 3.42 | 0.281 | -- | 3.71 | 0.507 | 8.67 | 24.6 | 430 | -- | -- |
| 290.23 | 0.793 | 7.41 | 2.9 | 3.31 | 0.483 | -- | -- | 0.905 | 8.71 | 24.6 | 437 | -- | -- |
| 721.59 | 1.25 | 7.5 | 2.76 | -- | 2.26 | -- | 2.98 | 1.16 | -- | 26.08 | 607 | -- | -- |
| 295.22 | 0.806 | 7.45 | 2.69 | 3.55 | -- | 1.4 | -- | 0.682 | 8.54 | -- | -- | -- | -- |
| 301.51 | 0.813 | 7.45 | 2.74 | 3.54 | -- | -- | -- | 0.683 | 8.57 | -- | -- | -- | -- |
| 715.99 | 1.25 | 7.38 | 3.46 | -- | 2.41 | -- | -- | 1.43 | -- | 25.84 | 612 | -- | -- |
| 491.33 | 1.03 | 7.5 | -- | 3.56 | -0.383 | -- | -- | 0.449 | 8.56 | 29.9 | 2609 | -- | -- |
| 1005.68 | 1.48 | 7.54 | 2.75 | -- | -- | -- | -- | 0.715 | -- | -- | -- | -- | -- |
| 498.92 | 1.04 | 7.52 | -- | 3.55 | -- | -- | -- | 0.378 | 8.51 | -- | -- | -- | -- |
| 1017.31 | 1.49 | 7.45 | -- | -- | 2.07 | -- | -- | 1.11 | -- | 25.6 | 611 | -- | -- |
| 1205.09 | 1.62 | 7.61 | -- | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 2 | 241.51 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 3 | 247.72 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 4 | 248.88 | wind | 1.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 6 | 249.18 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 9 | 249.35 | wind | 7.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 10 | 249.41 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 11 | 249.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 12 | 249.48 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 16 | 249.56 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 24 | 249.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 27 | 249.86 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 28 | 250.05 | wind | 7.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 32 | 250.29 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 33 | 250.32 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 35 | 250.35 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 52 | 250.77 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 62 | 251.11 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 68 | 251.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 83 | 251.41 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 96 | 251.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 103 | 251.72 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 115 | 251.92 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 16 |
| 125 | 252.00 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 145 | 252.19 | humidity | 90.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 151 | 252.24 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 198 | 252.71 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 207 | 252.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 210 | 252.82 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 213 | 252.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 218 | 252.86 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 229 | 253.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 243 | 253.14 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 246 | 253.17 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 251 | 253.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 277 | 253.35 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 285 | 253.43 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 290 | 253.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 20 |
| 318 | 253.76 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 333 | 253.86 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 353 | 254.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 369 | 254.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 373 | 254.22 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 383 | 254.34 | humidity | 90.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 441 | 254.85 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 472 | 255.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 478 | 255.06 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 493 | 255.16 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 502 | 255.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 512 | 255.29 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 539 | 255.51 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 557 | 255.70 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 561 | 255.73 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 586 | 255.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 601 | 255.92 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 612 | 255.98 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 619 | 256.02 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 646 | 256.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 668 | 256.43 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 708 | 256.72 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 729 | 256.80 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 12 |
| 745 | 256.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 746 | 256.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 753 | 256.96 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 759 | 257.00 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 773 | 257.03 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 780 | 257.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 782 | 257.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 788 | 257.09 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 835 | 257.24 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 865 | 257.38 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 878 | 257.44 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 892 | 257.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 917 | 257.58 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 960 | 257.75 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 990 | 257.88 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 15 |