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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0626100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0485) R2 : 0.0816
β1 : 0.992 (0.194) R2dD : 0.0705 R2D : 0.00408
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.856 (0.162) R2dE : 0.0916 R2E : 0.0113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.185 (0.118) R2dN8 : 0.00849 R2N8 : -0.0244
σ : 0.866
deviance : 345.99
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.3
memory length : 5879
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
321.48 0.842 3.47 0.982 0.444 -1.43 1.92 -1.93 0.0975 20.3 20.3 5852 -- --
324.15 0.839 3.39 1.24 0.432 -1.04 1.87 -- 0.187 20.3 21 5885 -- --
332.32 0.849 3.47 0.895 0.463 -1.41 -- -1.98 0.0907 19.5 20.5 5952 -- --
334.58 0.852 3.38 0.985 0.461 -0.862 -- -- 0.182 19.9 22.5 6050 -- --
343.78 0.864 3.46 0.882 -- -1.39 -- -1.94 0.0823 -- 20.6 5873 -- --
345.36 0.871 3.46 0.54 0.449 -- 1.84 -- -0.158 20.2 -- -- -- --
355.13 0.882 3.46 0.491 0.469 -- -- -- -0.154 19.3 -- -- -- --
345.99 0.866 3.38 0.992 -- -0.856 -- -- 0.185 -- 22.3 5879 -- --
352.86 0.875 3.41 -- 0.332 -0.559 -- -- 0.0501 19.2 23.5 3178 -- --
366.84 0.895 3.45 0.483 -- -- -- -- -0.162 -- -- -- -- --
361.48 0.889 3.47 -- 0.465 -- -- -- -0.209 19.4 -- -- -- --
362.37 0.887 3.42 -- -- -0.508 -- -- -0.0497 -- 23.95 2828 -- --
372.99 0.901 3.46 -- -- -- -- -- -0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.56 radiation 20 10 < th dose independent rect. 12 1
3 316.09 humidity 60 90 < th dose independent rect. 15 19
4 316.64 humidity 60 30 < th dose independent sin 11 NA
5 317.27 humidity 60 90 < th dose dependent rect. 16 17
6 317.39 humidity 60 10 < th dose independent rect. 16 18
10 318.06 humidity 60 10 < th dose dependent sin 11 NA
13 318.31 radiation 20 10 < th dose independent rect. 10 3
17 318.73 humidity 60 10 < th dose dependent rect. 16 18
18 318.82 radiation 10 10 > th dose dependent rect. 9 1
20 319.44 humidity 60 10 < th dose dependent rect. 14 21
28 319.95 humidity 60 10 < th dose independent rect. 14 21
41 320.44 radiation 40 90 > th dose dependent rect. 15 18
50 320.73 temperature 20 4320 < th dose independent rect. 22 1
54 320.93 humidity 60 4320 < th dose independent rect. 8 1
69 321.09 humidity 60 1440 > th dose independent rect. 1 8
71 321.22 radiation 40 90 > th dose independent rect. 15 18
81 321.73 radiation 40 90 > th dose dependent rect. 8 1
99 321.92 wind 1 10 < th dose dependent rect. 6 7
111 322.30 wind 1 10 < th dose dependent rect. 6 4
115 322.44 humidity 60 1440 > th dose independent rect. 23 10
116 322.46 humidity 60 4320 < th dose dependent rect. 8 1
129 322.47 temperature 20 4320 > th dose independent rect. 22 1
132 322.55 humidity 60 1440 > th dose independent rect. 20 13
133 322.61 radiation 40 90 > th dose dependent rect. 14 20
137 322.73 radiation 20 10 > th dose dependent rect. 15 20
138 322.75 temperature 25 10 < th dose independent rect. 9 2
140 322.75 radiation 10 10 < th dose dependent rect. 11 1
142 322.80 temperature 25 90 < th dose independent rect. 8 3
144 322.82 humidity 60 270 < th dose independent rect. 8 1
170 322.82 humidity 60 270 < th dose dependent rect. 8 1
228 322.95 humidity 60 1440 > th dose independent rect. 8 1
230 322.96 temperature 20 4320 < th dose independent rect. 21 9
232 323.00 wind 1 10 < th dose dependent rect. 6 10
243 323.07 temperature 20 4320 > th dose independent rect. 19 11
245 323.09 temperature 20 4320 > th dose independent rect. 17 13
246 323.12 radiation 40 90 > th dose independent rect. 8 1
284 323.16 temperature 20 4320 > th dose independent rect. 21 9
307 323.28 temperature 20 4320 < th dose independent rect. 17 13
310 323.31 temperature 20 4320 < th dose independent rect. 19 11
328 323.41 wind 1 10 < th dose dependent rect. 9 7
345 323.47 temperature 20 4320 < th dose independent rect. 2 4
355 323.51 humidity 90 30 < th dose dependent rect. 9 1
358 323.52 radiation 30 4320 > th dose dependent rect. 15 2
376 323.53 wind 1 10 < th dose dependent rect. 9 4
391 323.55 temperature 20 4320 > th dose independent rect. 2 4
392 323.56 temperature 20 4320 > th dose independent sin 13 NA
444 323.74 temperature 20 4320 < th dose independent sin 13 NA
473 323.83 wind 1 10 < th dose dependent rect. 9 1
476 323.84 humidity 60 10 < th dose independent rect. 9 2
542 323.86 humidity 60 10 < th dose dependent rect. 9 1
630 323.90 radiation 10 720 < th dose independent rect. 16 16
652 323.98 temperature 30 4320 < th dose independent rect. 14 20
708 324.06 wind 1 10 < th dose independent rect. 6 4
722 324.10 wind 1 10 < th dose independent rect. 9 7
740 324.13 temperature 30 4320 > th dose independent rect. 15 1
744 324.13 radiation 40 4320 > th dose dependent rect. 13 1
776 324.19 temperature 30 4320 < th dose independent rect. 14 6
777 324.19 temperature 30 4320 < th dose independent rect. 14 11
778 324.20 wind 1 10 < th dose independent rect. 9 1
780 324.20 temperature 30 4320 < th dose independent rect. 14 9
817 324.28 humidity 60 43200 < th dose dependent rect. 10 5
820 324.31 temperature 30 4320 > th dose independent rect. 14 20
821 324.31 humidity 60 43200 < th dose dependent rect. 12 1
850 324.35 temperature 20 4320 > th dose dependent rect. 22 1
863 324.40 humidity 60 43200 < th dose dependent rect. 19 21
909 324.43 temperature 20 4320 < th dose dependent rect. 22 2
912 324.44 temperature 30 4320 < th dose independent rect. 15 1
931 324.47 humidity 60 43200 < th dose dependent rect. 24 16
937 324.48 humidity 60 43200 < th dose dependent rect. 2 14
940 324.49 temperature 30 4320 < th dose independent rect. 14 3
972 324.56 temperature 20 4320 > th dose dependent rect. 19 4
993 324.58 temperature 30 4320 > th dose independent rect. 14 5