Os03g0625800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0625800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.9 | 0.495 | 4.75 | 0.554 | 0.779 | 0.983 | -0.889 | -4.23 | -0.242 | 21.5 | 26.3 | 10 | -- | -- |
| 115.55 | 0.504 | 4.7 | 0.948 | 0.756 | 0.617 | -0.764 | -- | -0.152 | 21.3 | 26.3 | 10 | -- | -- |
| 113.45 | 0.5 | 4.74 | 0.63 | 0.782 | 1.02 | -- | -3.91 | -0.226 | 21.8 | 26.47 | 10 | -- | -- |
| 117.38 | 0.508 | 4.7 | 0.964 | 0.761 | 0.686 | -- | -- | -0.155 | 21.7 | 26.3 | 10 | -- | -- |
| 147.99 | 0.567 | 4.72 | 0.672 | -- | 0.783 | -- | -3.49 | -0.225 | -- | 26.5 | 29 | -- | -- |
| 121.21 | 0.516 | 4.7 | 1.03 | 0.745 | -- | -0.992 | -- | -0.131 | 20.3 | -- | -- | -- | -- |
| 124.14 | 0.522 | 4.7 | 1.06 | 0.744 | -- | -- | -- | -0.132 | 20.6 | -- | -- | -- | -- |
| 136.5 | 0.544 | 4.71 | 0.788 | -- | 1.1 | -- | -- | -0.303 | -- | 11.91 | 650 | -- | -- |
| 141.03 | 0.556 | 4.73 | -- | 0.796 | 0.894 | -- | -- | -0.288 | 22.3 | 25.5 | 19 | -- | -- |
| 155.2 | 0.582 | 4.68 | 1.05 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 153.56 | 0.58 | 4.72 | -- | 0.74 | -- | -- | -- | -0.25 | 20.7 | -- | -- | -- | -- |
| 151.32 | 0.573 | 4.74 | -- | -- | 1.39 | -- | -- | -0.427 | -- | -6.77 | 684 | -- | -- |
| 184.49 | 0.634 | 4.7 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 5 | 106.64 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 7 | 107.66 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 12 | 108.34 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 15 | 108.47 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 12 |
| 20 | 108.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 9 |
| 24 | 108.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 29 | 108.87 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 39 | 109.07 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 7 |
| 41 | 109.08 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 42 | 109.10 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 45 | 109.12 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 8 |
| 47 | 109.13 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 51 | 109.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 53 | 109.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 54 | 109.25 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 57 | 109.29 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 76 | 109.44 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 81 | 109.47 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 82 | 109.50 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 101 | 109.69 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 103 | 109.70 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 111 | 109.76 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 122 | 109.86 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 16 |
| 137 | 109.94 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 139 | 109.95 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 145 | 109.99 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 179 | 110.18 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 188 | 110.21 | temperature | 10.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 194 | 110.24 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 212 | 110.30 | temperature | 30.0 | 30 | < th | dose dependent | sin | 0 | NA |
| 235 | 110.36 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 242 | 110.39 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 284 | 110.58 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 333 | 110.79 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 343 | 110.83 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 362 | 110.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 385 | 110.94 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 398 | 110.97 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 448 | 111.12 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 10 |
| 491 | 111.21 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 502 | 111.22 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 518 | 111.29 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 533 | 111.31 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 548 | 111.35 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 577 | 111.40 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 585 | 111.41 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 9 |
| 601 | 111.43 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 635 | 111.49 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 674 | 111.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 679 | 111.56 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 683 | 111.57 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 687 | 111.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 698 | 111.59 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 740 | 111.66 | temperature | 15.0 | 30 | > th | dose independent | rect. | 21 | 8 |
| 753 | 111.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 12 |
| 764 | 111.69 | wind | 9.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 767 | 111.70 | wind | 7.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 815 | 111.76 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 14 |
| 839 | 111.82 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 846 | 111.82 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 849 | 111.83 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 23 |
| 865 | 111.86 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 914 | 111.96 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 9 |
| 958 | 112.04 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 973 | 112.07 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 8 |
| 975 | 112.07 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 8 |
| 984 | 112.09 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 7 |
| 988 | 112.09 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 7 |