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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0625100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0367) R2 : 0.0113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.0773) R2dN8 : 0.0145 R2N8 : 0.0113
σ : 0.691
deviance : 219.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.45 0.677 3.23 -1.78 0.0421 1.68 0.0263 -14.3 -0.19 15.8 30.7 745 -- --
214.61 0.688 3.08 -0.296 0.113 -0.274 0.091 -- -0.229 16.9 30.7 745 -- --
207.37 0.671 3.23 -1.74 0.041 1.7 -- -14.3 -0.188 15.5 30.68 727 -- --
214.63 0.687 3.08 -0.296 0.114 -0.269 -- -- -0.228 17.2 30.7 745 -- --
207.45 0.671 3.23 -1.76 -- 1.72 -- -14.5 -0.189 -- 30.7 727 -- --
216.34 0.69 3.08 -0.323 0.0679 -- -0.146 -- -0.21 19.2 -- -- -- --
216.39 0.689 3.08 -0.32 0.0698 -- -- -- -0.21 18.4 -- -- -- --
215.14 0.683 3.08 -0.363 -- 0.228 -- -- -0.223 -- 29.15 706 -- --
216.75 0.689 3.07 -- 0.128 -0.304 -- -- -0.199 17 30.44 1653 -- --
216.64 0.688 3.07 -0.322 -- -- -- -- -0.212 -- -- -- -- --
219.08 0.692 3.07 -- 0.0742 -- -- -- -0.175 18.2 -- -- -- --
217.55 0.689 3.07 -- -- -0.257 -- -- -0.198 -- 30.44 1653 -- --
219.37 0.691 3.07 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.61 humidity 80 10 > th dose independent rect. 9 2
5 196.64 humidity 80 10 > th dose dependent rect. 10 1
11 198.92 atmosphere 1000 10 < th dose independent rect. 5 6
21 199.11 atmosphere 1000 90 < th dose independent rect. 8 1
22 199.11 atmosphere 1000 10 < th dose independent rect. 8 2
35 199.28 atmosphere 1000 270 < th dose independent rect. 5 2
59 200.15 atmosphere 1000 90 < th dose dependent rect. 9 1
75 200.49 atmosphere 1000 10 < th dose independent rect. 24 11
91 200.93 atmosphere 1000 30 < th dose dependent rect. 6 5
98 201.04 atmosphere 1000 270 < th dose dependent rect. 6 1
124 201.55 humidity 70 90 < th dose dependent rect. 19 12
131 201.68 humidity 70 90 < th dose independent rect. 19 12
180 204.12 humidity 70 90 < th dose dependent rect. 19 1
192 204.25 humidity 70 90 < th dose independent rect. 19 1
234 205.20 atmosphere 1000 720 < th dose dependent rect. 22 3
246 205.59 radiation 40 90 > th dose dependent rect. 8 2
276 205.63 atmosphere 1000 30 < th dose dependent rect. 24 11
285 205.80 atmosphere 1000 720 < th dose independent rect. 22 4
286 205.83 atmosphere 1000 720 < th dose independent rect. 23 2
294 205.99 radiation 40 10 > th dose dependent rect. 9 1
323 206.29 wind 9 30 > th dose independent rect. 1 10
327 206.29 wind 9 30 > th dose dependent rect. 1 10
390 206.51 wind 1 10 < th dose dependent rect. 1 1
475 207.50 temperature 30 720 > th dose dependent rect. 14 1
478 207.55 atmosphere 1000 90 < th dose independent rect. 16 18
505 207.88 humidity 70 30 > th dose independent sin 11 NA
507 207.91 temperature 30 1440 < th dose independent rect. 18 4
515 208.03 temperature 10 1440 > th dose independent rect. 19 1
518 208.03 temperature 30 1440 < th dose independent rect. 19 1
522 208.03 humidity 50 1440 > th dose independent rect. 19 1
524 208.03 atmosphere 995 1440 > th dose independent rect. 19 1
528 208.03 radiation 1 1440 < th dose independent rect. 19 1
548 208.03 temperature 10 1440 > th dose independent rect. 20 23
551 208.03 radiation 1 1440 < th dose dependent rect. 19 1
574 208.16 temperature 30 1440 < th dose independent rect. 18 6
577 208.23 atmosphere 1000 270 > th dose independent sin 7 NA
579 208.24 atmosphere 1000 270 < th dose independent sin 7 NA
580 208.24 temperature 30 720 < th dose independent rect. 24 23
589 208.26 atmosphere 1000 10 < th dose independent rect. 17 18
591 208.27 temperature 20 10 > th dose dependent rect. 19 1
625 208.37 temperature 30 720 < th dose independent rect. 14 15
635 208.41 humidity 70 30 > th dose independent rect. 15 18
641 208.43 wind 9 1440 < th dose independent rect. 19 1
642 208.43 atmosphere 1015 720 < th dose dependent rect. 23 1
644 208.45 humidity 70 90 > th dose independent rect. 17 15
649 208.51 temperature 30 720 < th dose independent rect. 24 21
650 208.53 humidity 70 30 < th dose independent sin 11 NA
664 208.58 temperature 30 1440 < th dose independent rect. 18 14
665 208.58 temperature 30 720 < th dose independent rect. 14 23
678 208.66 radiation 40 10 > th dose dependent sin 11 NA
681 208.67 temperature 30 720 < th dose independent rect. 14 8
699 208.77 humidity 70 30 > th dose independent rect. 19 14
706 208.81 humidity 70 10 > th dose independent rect. 17 16
708 208.82 temperature 30 720 < th dose independent rect. 24 19
717 208.88 temperature 30 720 < th dose independent rect. 9 17
719 208.89 atmosphere 1015 30 < th dose dependent rect. 23 12
726 208.94 radiation 30 30 < th dose independent rect. 11 22
736 208.98 humidity 70 90 > th dose independent rect. 10 22
739 208.99 temperature 20 30 > th dose dependent rect. 1 1
753 209.01 temperature 20 30 > th dose dependent rect. 23 3
756 209.02 temperature 25 30 > th dose dependent rect. 23 1
767 209.05 wind 1 10 < th dose independent rect. 1 1
778 209.09 radiation 40 10 < th dose independent sin 13 NA
836 209.17 atmosphere 1000 720 > th dose independent rect. 19 15
870 209.28 humidity 50 30 > th dose dependent rect. 11 22
877 209.31 temperature 30 720 > th dose independent rect. 14 1
922 209.39 atmosphere 1000 720 < th dose dependent sin 11 NA
934 209.45 wind 1 720 > th dose independent rect. 21 1
935 209.45 atmosphere 1000 720 > th dose independent rect. 22 9
953 209.48 temperature 30 720 > th dose dependent sin 14 NA
960 209.50 temperature 30 720 < th dose independent rect. 10 9
971 209.52 temperature 30 720 < th dose independent rect. 24 15
995 209.56 temperature 30 720 < th dose independent rect. 7 14