FiT-DB / Search/ Help/ Sample detail

Os03g0624800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0165) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.249 (0.0347) R2dN8 : 0.131 R2N8 : 0.101
σ : 0.311
deviance : 44.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.79 0.273 9.74 0.425 0.168 0.332 0.287 -0.219 0.308 23.1 18.14 10 -- --
33.77 0.271 9.73 0.417 0.174 0.314 0.412 -- 0.316 22.6 16.1 9 -- --
33.68 0.27 9.73 0.402 0.188 0.34 -- -0.355 0.308 24 16.1 9 -- --
34.58 0.274 9.74 0.402 0.2 0.347 -- -- 0.307 0.0627 16.12 9 -- --
34.73 0.274 9.74 0.44 -- 0.23 -- -0.431 0.304 -- 18.06 9 -- --
38.19 0.29 9.73 0.435 0.0828 -- -0.564 -- 0.295 9.34 -- -- -- --
38.91 0.292 9.73 0.418 0.116 -- -- -- 0.297 12.6 -- -- -- --
35.62 0.278 9.73 0.418 -- 0.217 -- -- 0.298 -- 16.87 9 -- --
38.73 0.29 9.75 -- 0.194 0.347 -- -- 0.262 23.9 16.85 9 -- --
39.76 0.295 9.74 0.414 -- -- -- -- 0.295 -- -- -- -- --
43.51 0.309 9.74 -- 0.11 -- -- -- 0.25 12.4 -- -- -- --
39.96 0.294 9.74 -- -- 0.223 -- -- 0.257 -- 16.7 9 -- --
44.27 0.311 9.75 -- -- -- -- -- 0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.40 radiation 10.0 270 < th dose independent rect. 3 4
3 31.48 radiation 30.0 90 < th dose dependent rect. 5 4
10 31.73 radiation 30.0 10 < th dose dependent rect. 5 13
12 31.79 wind 1.0 270 > th dose independent rect. 3 4
15 31.84 temperature 15.0 270 > th dose dependent rect. 4 2
16 31.85 temperature 10.0 270 > th dose dependent rect. 3 4
20 31.88 radiation 20.0 10 < th dose dependent rect. 6 4
22 31.89 radiation 20.0 10 < th dose independent rect. 5 5
30 31.95 radiation 20.0 10 < th dose independent rect. 5 13
34 31.97 radiation 20.0 90 < th dose dependent rect. 5 12
36 32.01 humidity 80.0 90 > th dose independent rect. 5 4
43 32.07 wind 9.0 270 < th dose independent rect. 7 20
44 32.07 humidity 60.0 90 > th dose dependent rect. 5 4
49 32.09 radiation 10.0 270 < th dose dependent rect. 3 11
58 32.15 radiation 10.0 270 < th dose dependent rect. 3 14
77 32.22 temperature 10.0 10 > th dose dependent rect. 9 20
81 32.24 wind 9.0 90 < th dose independent rect. 7 22
102 32.33 humidity 70.0 270 > th dose independent rect. 2 5
107 32.34 precipitation 0.1 270 < th dose independent rect. 2 5
111 32.34 precipitation 0.1 270 < th dose dependent rect. 2 5
120 32.37 wind 7.0 270 < th dose independent rect. 2 5
127 32.40 radiation 10.0 10 < th dose independent rect. 5 9
134 32.42 temperature 10.0 270 > th dose independent rect. 2 5
136 32.42 temperature 30.0 270 < th dose independent rect. 2 5
137 32.42 humidity 50.0 270 > th dose independent rect. 2 5
139 32.42 atmosphere 995.0 270 > th dose independent rect. 2 5
140 32.42 atmosphere 1015.0 270 < th dose independent rect. 2 5
142 32.42 humidity 80.0 90 > th dose independent rect. 5 6
143 32.42 temperature 10.0 270 > th dose independent rect. 7 19
147 32.43 wind 1.0 90 > th dose independent rect. 5 2
151 32.44 atmosphere 995.0 270 > th dose dependent rect. 2 5
152 32.44 humidity 70.0 90 > th dose dependent rect. 5 6
170 32.46 radiation 10.0 10 > th dose independent rect. 9 5
182 32.50 radiation 10.0 270 < th dose independent rect. 2 15
189 32.51 atmosphere 995.0 270 > th dose independent rect. 7 19
190 32.51 precipitation 0.1 270 < th dose independent rect. 7 19
192 32.51 temperature 10.0 10 > th dose dependent rect. 5 4
194 32.51 temperature 10.0 270 > th dose dependent rect. 7 5
199 32.51 precipitation 0.1 270 < th dose dependent rect. 7 19
206 32.53 wind 5.0 90 < th dose independent rect. 5 2
214 32.54 wind 1.0 270 > th dose independent rect. 12 19
216 32.55 precipitation 0.1 90 < th dose independent rect. 5 2
218 32.55 radiation 10.0 270 > th dose independent rect. 16 20
219 32.55 precipitation 0.1 90 < th dose dependent rect. 5 2
220 32.55 humidity 50.0 270 > th dose dependent rect. 3 4
221 32.55 radiation 40.0 270 < th dose dependent rect. 12 19
230 32.57 temperature 10.0 90 > th dose independent rect. 5 2
232 32.57 temperature 30.0 90 < th dose independent rect. 5 2
233 32.57 humidity 50.0 90 > th dose independent rect. 5 2
235 32.57 atmosphere 995.0 90 > th dose independent rect. 5 2
236 32.57 atmosphere 1015.0 90 < th dose independent rect. 5 2
242 32.57 temperature 10.0 90 > th dose independent rect. 7 22
246 32.58 radiation 30.0 270 < th dose independent rect. 12 19
250 32.59 radiation 1.0 90 > th dose independent rect. 4 3
261 32.59 atmosphere 1015.0 270 < th dose independent rect. 7 19
280 32.61 humidity 50.0 10 > th dose dependent rect. 5 13
282 32.62 humidity 70.0 10 > th dose independent rect. 5 4
289 32.63 humidity 90.0 270 < th dose independent rect. 7 4
292 32.63 humidity 70.0 10 > th dose independent rect. 5 13
294 32.63 radiation 20.0 90 < th dose independent rect. 13 21
300 32.64 wind 9.0 10 < th dose independent rect. 9 20
305 32.65 radiation 1.0 30 < th dose dependent sin 11 NA
311 32.66 atmosphere 995.0 90 > th dose dependent rect. 5 3
321 32.68 radiation 10.0 10 < th dose independent rect. 6 2
330 32.69 radiation 1.0 30 > th dose independent rect. 17 16
339 32.70 wind 9.0 90 < th dose dependent rect. 5 2
349 32.72 radiation 1.0 30 > th dose independent sin 11 NA
351 32.72 radiation 20.0 270 < th dose dependent sin 5 NA
364 32.74 humidity 80.0 90 > th dose independent rect. 5 10
367 32.74 temperature 15.0 10 > th dose dependent rect. 9 4
386 32.75 atmosphere 995.0 10 > th dose dependent rect. 5 4
392 32.76 radiation 40.0 10 < th dose independent rect. 13 20
401 32.77 temperature 10.0 270 > th dose dependent rect. 9 1
459 32.81 atmosphere 995.0 90 > th dose independent rect. 7 22
471 32.82 radiation 20.0 90 < th dose dependent rect. 5 10
483 32.83 humidity 80.0 10 < th dose independent rect. 9 4
522 32.86 radiation 10.0 10 > th dose independent rect. 7 7
532 32.87 radiation 20.0 10 < th dose independent sin 3 NA
533 32.87 radiation 1.0 270 > th dose independent rect. 7 5
537 32.87 radiation 20.0 10 < th dose dependent rect. 5 9
547 32.89 precipitation 0.1 10 < th dose independent rect. 5 4
551 32.89 precipitation 0.1 10 < th dose dependent rect. 5 4
567 32.90 wind 7.0 10 < th dose independent rect. 5 4
569 32.90 temperature 10.0 10 > th dose independent rect. 5 4
571 32.90 temperature 30.0 10 < th dose independent rect. 5 4
572 32.90 humidity 50.0 10 > th dose independent rect. 5 4
574 32.90 atmosphere 995.0 10 > th dose independent rect. 5 4
575 32.90 atmosphere 1015.0 10 < th dose independent rect. 5 4
594 32.90 temperature 10.0 10 > th dose independent rect. 9 20
599 32.91 radiation 10.0 270 > th dose independent rect. 9 1
601 32.91 wind 7.0 270 < th dose independent rect. 7 5
613 32.92 precipitation 0.1 90 < th dose independent rect. 7 22
619 32.92 precipitation 0.1 90 < th dose dependent rect. 7 22
620 32.93 temperature 15.0 270 > th dose independent rect. 7 5
621 32.93 humidity 50.0 270 > th dose independent rect. 7 19
623 32.93 humidity 70.0 90 > th dose dependent rect. 5 10
631 32.94 atmosphere 1015.0 90 < th dose independent rect. 7 22
645 32.95 wind 9.0 270 < th dose dependent rect. 2 5
672 32.97 atmosphere 995.0 10 > th dose independent rect. 9 20
673 32.97 radiation 10.0 10 > th dose independent rect. 17 21
680 32.98 radiation 10.0 10 < th dose independent sin 1 NA
688 32.98 humidity 80.0 10 > th dose independent rect. 5 10
703 32.98 humidity 60.0 10 > th dose dependent rect. 6 3
719 32.99 temperature 20.0 90 > th dose independent rect. 9 19
721 32.99 atmosphere 1015.0 10 < th dose independent rect. 9 20
732 33.00 wind 1.0 30 > th dose independent rect. 9 20
743 33.00 radiation 40.0 10 < th dose dependent rect. 13 21
761 33.01 wind 9.0 90 < th dose dependent rect. 5 4
792 33.04 radiation 1.0 30 < th dose independent sin 11 NA
795 33.04 precipitation 0.1 270 < th dose independent rect. 11 20
801 33.04 precipitation 0.1 270 < th dose dependent rect. 11 20
809 33.05 humidity 90.0 90 < th dose dependent rect. 7 6
824 33.06 humidity 90.0 10 < th dose dependent rect. 9 4
859 33.09 radiation 10.0 270 < th dose independent sin 5 NA
895 33.10 wind 1.0 270 > th dose independent rect. 7 20
897 33.10 radiation 30.0 10 < th dose dependent sin 2 NA
942 33.12 humidity 90.0 10 < th dose dependent rect. 7 7
993 33.14 radiation 10.0 90 < th dose independent rect. 5 10