FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0624000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CDPK substrate protein 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0251) R2 : 0.359
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.6 (0.0654) R2dC : 0.122 R2C : 0.128
β3 : 0.751 (0.0665) R2dE : 0.191 R2E : 0.122
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.396 (0.0544) R2dN8 : 0.104 R2N8 : 0.0232
σ : 0.469
deviance : 101.27
__
_____
C
peak time of C : 5.26
E
wheather : temperature
threshold : 30.86
memory length : 1163
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.77 0.467 3.39 -1.03 0.608 1.23 -0.00947 -4.04 0.175 5.3 27.98 1269 -- --
101.02 0.468 3.28 -0.126 0.609 0.765 -0.0285 -- 0.378 5.14 31.08 1165 -- --
98.66 0.463 3.38 -1.01 0.61 1.23 -- -4.14 0.216 5.28 28.33 1265 -- --
100.98 0.468 3.27 -0.113 0.618 0.758 -- -- 0.388 5.12 31 1163 -- --
117.85 0.506 3.39 -0.962 -- 1.26 -- -3.84 0.226 -- 28.21 1268 -- --
128.38 0.531 3.3 0.0706 0.672 -- 0.0535 -- 0.249 4.66 -- -- -- --
128.39 0.531 3.3 0.0702 0.672 -- -- -- 0.249 4.66 -- -- -- --
119.92 0.51 3.27 -0.118 -- 0.811 -- -- 0.42 -- 30.2 1205 -- --
101.27 0.469 3.27 -- 0.6 0.751 -- -- 0.396 5.26 30.86 1163 -- --
152.42 0.577 3.31 0.0959 -- -- -- -- 0.267 -- -- -- -- --
128.52 0.53 3.3 -- 0.674 -- -- -- 0.241 4.65 -- -- -- --
120.28 0.511 3.27 -- -- 0.796 -- -- 0.429 -- 30.22 1205 -- --
152.66 0.577 3.31 -- -- -- -- -- 0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.17 humidity 70 720 > th dose independent rect. 18 9
2 97.19 temperature 30 720 > th dose dependent rect. 18 1
16 97.45 temperature 20 720 > th dose dependent rect. 17 14
35 98.13 radiation 10 14400 > th dose independent rect. 5 1
48 98.13 temperature 10 720 > th dose dependent rect. 17 7
49 98.21 humidity 70 720 < th dose independent rect. 18 2
76 98.72 radiation 10 1440 < th dose dependent rect. 18 10
108 99.24 temperature 20 720 > th dose dependent sin 13 NA
118 99.50 humidity 70 720 < th dose dependent rect. 19 12
120 99.51 temperature 30 720 < th dose dependent rect. 17 10
123 99.57 humidity 70 720 < th dose dependent rect. 19 1
149 99.83 temperature 10 720 > th dose dependent rect. 17 14
155 99.96 wind 5 43200 > th dose independent rect. 20 21
157 99.98 wind 5 43200 < th dose independent rect. 20 20
164 100.02 radiation 10 1440 < th dose dependent rect. 18 2
166 100.02 radiation 10 1440 < th dose dependent rect. 18 7
171 100.04 temperature 30 1440 < th dose independent sin 13 NA
176 100.06 wind 5 43200 > th dose independent rect. 24 16
192 100.08 wind 5 43200 > th dose independent rect. 2 14
197 100.10 wind 5 43200 < th dose independent rect. 23 17
199 100.11 radiation 30 14400 > th dose independent rect. 16 16
203 100.12 wind 5 43200 > th dose independent rect. 8 7
210 100.17 wind 5 43200 < th dose independent rect. 7 8
211 100.17 temperature 30 720 < th dose independent rect. 17 9
218 100.19 wind 5 43200 < th dose independent rect. 2 14
220 100.20 temperature 30 1440 > th dose independent sin 13 NA
222 100.20 temperature 25 1440 > th dose dependent rect. 16 1
251 100.29 temperature 30 1440 < th dose independent rect. 15 16
255 100.30 humidity 50 1440 < th dose independent rect. 16 1
256 100.30 temperature 30 1440 < th dose independent rect. 15 5
265 100.32 temperature 30 1440 < th dose independent rect. 15 9
271 100.33 temperature 30 1440 > th dose independent rect. 15 4
329 100.42 temperature 20 90 > th dose dependent rect. 3 4
354 100.51 humidity 50 1440 < th dose dependent rect. 16 1
373 100.60 wind 5 43200 > th dose independent sin 3 NA
399 100.69 wind 5 43200 < th dose independent sin 3 NA
457 100.78 temperature 25 1440 > th dose dependent rect. 6 1
482 100.83 temperature 10 1440 > th dose dependent rect. 16 1
501 100.86 temperature 30 1440 < th dose independent rect. 12 19
508 100.87 temperature 30 1440 < th dose independent rect. 12 7
513 100.87 temperature 30 1440 < th dose independent rect. 9 22
516 100.88 temperature 30 1440 < th dose independent rect. 9 10
519 100.88 temperature 30 1440 < th dose independent rect. 12 12
520 100.88 temperature 30 1440 < th dose independent rect. 12 16
529 100.88 wind 5 43200 > th dose dependent rect. 20 20
534 100.89 temperature 30 1440 < th dose independent rect. 9 15
536 100.89 temperature 30 1440 < th dose independent rect. 9 19
541 100.89 wind 5 43200 > th dose dependent rect. 24 16
574 100.91 wind 5 43200 > th dose dependent rect. 2 14
642 100.96 temperature 30 720 > th dose independent rect. 18 1
678 100.99 wind 5 43200 < th dose independent rect. 9 5
722 101.07 temperature 10 720 > th dose dependent rect. 13 17
751 101.11 wind 5 43200 > th dose dependent rect. 7 8
774 101.16 radiation 30 14400 < th dose independent rect. 16 12
789 101.19 temperature 10 1440 > th dose dependent rect. 16 3
813 101.21 temperature 30 1440 < th dose independent rect. 2 17
815 101.21 temperature 30 1440 < th dose independent rect. 14 23
830 101.22 temperature 30 1440 < th dose independent rect. 2 22
874 101.24 temperature 30 1440 < th dose independent rect. 23 20
879 101.24 temperature 30 1440 < th dose independent rect. 17 23
905 101.26 temperature 30 1440 < th dose independent no NA NA
919 101.26 temperature 30 1440 < th dose independent rect. 5 23
982 101.31 temperature 25 1440 > th dose dependent rect. 5 19