Os03g0622300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0622300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.47 | 0.547 | 7.74 | -0.148 | 0.855 | 1.58 | 0.947 | 2.33 | -0.25 | 17.1 | 5.524 | 114 | -- | -- |
| 142.86 | 0.557 | 7.73 | -0.104 | 0.901 | 1.35 | 1.75 | -- | -0.244 | 16.2 | 7.74 | 125 | -- | -- |
| 137.29 | 0.546 | 7.73 | -0.158 | 0.845 | 1.58 | -- | 2.65 | -0.242 | 17 | 5.229 | 125 | -- | -- |
| 150.89 | 0.572 | 7.73 | -0.102 | 0.862 | 1.45 | -- | -- | -0.242 | 16.8 | 4.994 | 126 | -- | -- |
| 159.96 | 0.589 | 7.73 | -0.172 | -- | 1.86 | -- | 2.41 | -0.282 | -- | -0.0007782 | 206 | -- | -- |
| 169.3 | 0.61 | 7.71 | -0.128 | 1.44 | -- | 1.7 | -- | -0.174 | 15.1 | -- | -- | -- | -- |
| 178.86 | 0.626 | 7.7 | -0.0915 | 1.45 | -- | -- | -- | -0.164 | 15.1 | -- | -- | -- | -- |
| 173.15 | 0.613 | 7.73 | -0.167 | -- | 1.82 | -- | -- | -0.299 | -- | -2.051 | 226 | -- | -- |
| 151.16 | 0.573 | 7.72 | -- | 0.871 | 1.43 | -- | -- | -0.226 | 16.8 | 4.7 | 126 | -- | -- |
| 298.28 | 0.807 | 7.71 | -0.153 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 179.08 | 0.626 | 7.7 | -- | 1.45 | -- | -- | -- | -0.154 | 15.1 | -- | -- | -- | -- |
| 173.88 | 0.614 | 7.72 | -- | -- | 1.82 | -- | -- | -0.281 | -- | -4.581 | 226 | -- | -- |
| 298.9 | 0.807 | 7.7 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 6 | 127.35 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 12 | 128.31 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 13 | 128.31 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 20 | 129.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 26 | 129.52 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 61 | 130.97 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 17 |
| 123 | 133.34 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 157 | 133.85 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 202 | 134.06 | radiation | 1.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 230 | 134.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 234 | 134.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 235 | 134.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 236 | 134.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 237 | 134.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 238 | 134.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 243 | 134.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 244 | 134.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 247 | 134.34 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 262 | 134.35 | radiation | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 282 | 134.47 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 286 | 134.52 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 288 | 134.54 | radiation | 40.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 293 | 134.57 | radiation | 1.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 300 | 134.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 301 | 134.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 313 | 134.77 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 356 | 135.32 | radiation | 40.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 360 | 135.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 361 | 135.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 362 | 135.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 415 | 135.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 421 | 136.03 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 426 | 136.11 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 430 | 136.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 495 | 136.46 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 505 | 136.49 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 507 | 136.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 9 |
| 508 | 136.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 523 | 136.59 | temperature | 15.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 533 | 136.73 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 535 | 136.74 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 539 | 136.78 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 542 | 136.78 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 543 | 136.79 | radiation | 40.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 560 | 136.83 | radiation | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 656 | 136.89 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 8 |
| 715 | 136.93 | radiation | 40.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 753 | 137.10 | wind | 9.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 754 | 137.10 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 799 | 137.39 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 814 | 137.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 815 | 137.48 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 876 | 137.68 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 936 | 137.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 950 | 137.93 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 981 | 138.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 982 | 138.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 984 | 138.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |