Os03g0618900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0618900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.92 | 0.387 | 10.1 | 0.0406 | 1.9 | 0.888 | 0.551 | 0.271 | -0.435 | 6.97 | 25.3 | 5555 | -- | -- |
| 67.96 | 0.384 | 10.1 | -0.0268 | 1.88 | 0.911 | 0.565 | -- | -0.453 | 6.99 | 25.3 | 5570 | -- | -- |
| 68.69 | 0.386 | 10.1 | 0.0485 | 1.89 | 0.883 | -- | 0.268 | -0.439 | 6.94 | 25.3 | 5578 | -- | -- |
| 68.72 | 0.386 | 10.1 | -0.0223 | 1.89 | 0.901 | -- | -- | -0.453 | 6.93 | 25.4 | 5579 | -- | -- |
| 255.21 | 0.744 | 10.1 | 0.21 | -- | 0.911 | -- | 0.646 | -0.375 | -- | 26.1 | 5685 | -- | -- |
| 97.6 | 0.463 | 10.1 | 0.303 | 1.92 | -- | 0.538 | -- | -0.375 | 6.8 | -- | -- | -- | -- |
| 98.34 | 0.464 | 10.1 | 0.312 | 1.92 | -- | -- | -- | -0.377 | 6.78 | -- | -- | -- | -- |
| 255.03 | 0.744 | 10.2 | 0.0279 | -- | 0.922 | -- | -- | -0.388 | -- | 26.59 | 5685 | -- | -- |
| 68.73 | 0.386 | 10.1 | -- | 1.89 | 0.902 | -- | -- | -0.451 | 6.94 | 25.4 | 5578 | -- | -- |
| 291.34 | 0.798 | 10.1 | 0.355 | -- | -- | -- | -- | -0.339 | -- | -- | -- | -- | -- |
| 100.9 | 0.47 | 10.1 | -- | 1.92 | -- | -- | -- | -0.411 | 6.77 | -- | -- | -- | -- |
| 254.97 | 0.744 | 10.2 | -- | -- | 0.928 | -- | -- | -0.381 | -- | 26.98 | 5681 | -- | -- |
| 294.66 | 0.801 | 10.2 | -- | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 2 | 64.50 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 42 | 66.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 50 | 66.85 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 55 | 66.95 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 59 | 67.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 68 | 67.28 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 90 | 67.52 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 91 | 67.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 95 | 67.55 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 96 | 67.58 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 99 | 67.61 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 111 | 67.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 132 | 67.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 137 | 67.85 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 140 | 67.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 142 | 67.87 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 146 | 67.89 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 154 | 67.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 157 | 67.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 199 | 67.99 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 229 | 68.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 279 | 68.07 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 281 | 68.09 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 286 | 68.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 306 | 68.11 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 334 | 68.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 336 | 68.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 347 | 68.19 | temperature | 30 | 14400 | < th | dose independent | sin | 1 | NA |
| 351 | 68.19 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 368 | 68.22 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 390 | 68.24 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 395 | 68.25 | temperature | 30 | 14400 | > th | dose independent | sin | 1 | NA |
| 397 | 68.25 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 398 | 68.25 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 482 | 68.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 526 | 68.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 532 | 68.31 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 632 | 68.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 676 | 68.34 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 714 | 68.37 | temperature | 25 | 14400 | < th | dose independent | sin | 12 | NA |
| 773 | 68.41 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 779 | 68.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 930 | 68.54 | temperature | 25 | 14400 | > th | dose independent | sin | 12 | NA |
| 953 | 68.56 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 981 | 68.60 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 996 | 68.63 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |