Os03g0616500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0616500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.59 | 0.389 | 3.38 | 0.12 | 0.169 | -0.246 | -0.392 | -1.21 | -0.0841 | 5.79 | 70 | 4445 | -- | -- |
| 70.37 | 0.391 | 3.38 | 0.0601 | 0.173 | -0.32 | -0.464 | -- | -0.0919 | 5.45 | 71 | 4374 | -- | -- |
| 68.89 | 0.387 | 3.38 | 0.116 | 0.167 | -0.236 | -- | -1.22 | -0.085 | 6.56 | 70.38 | 4450 | -- | -- |
| 70.66 | 0.392 | 3.38 | 0.0433 | 0.164 | -0.327 | -- | -- | -0.112 | 6.86 | 71 | 4247 | -- | -- |
| 70.4 | 0.391 | 3.38 | 0.122 | -- | -0.236 | -- | -1.23 | -0.0784 | -- | 70.17 | 4425 | -- | -- |
| 72.15 | 0.398 | 3.38 | 0.0501 | 0.169 | -- | -0.414 | -- | -0.0704 | 5.69 | -- | -- | -- | -- |
| 72.48 | 0.399 | 3.37 | 0.0489 | 0.171 | -- | -- | -- | -0.0682 | 6.54 | -- | -- | -- | -- |
| 72.1 | 0.395 | 3.39 | 0.0486 | -- | -0.337 | -- | -- | -0.112 | -- | 70.06 | 4257 | -- | -- |
| 70.72 | 0.392 | 3.38 | -- | 0.165 | -0.331 | -- | -- | -0.119 | 6.81 | 71 | 4245 | -- | -- |
| 74 | 0.402 | 3.38 | 0.0531 | -- | -- | -- | -- | -0.0647 | -- | -- | -- | -- | -- |
| 72.55 | 0.398 | 3.38 | -- | 0.172 | -- | -- | -- | -0.0737 | 6.52 | -- | -- | -- | -- |
| 72.16 | 0.396 | 3.39 | -- | -- | -0.34 | -- | -- | -0.117 | -- | 70.02 | 4260 | -- | -- |
| 74.08 | 0.402 | 3.38 | -- | -- | -- | -- | -- | -0.0706 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.44 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 2 | 66.44 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 3 | 66.70 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 5 | 66.74 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 8 | 66.86 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 9 | 66.86 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 12 | 66.97 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 13 | 66.99 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 14 | 67.00 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 15 | 67.00 | temperature | 10.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 16 | 67.04 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 17 | 67.05 | temperature | 10.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 18 | 67.05 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 19 | 67.05 | temperature | 10.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 20 | 67.05 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 21 | 67.07 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 26 | 67.18 | humidity | 50.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 27 | 67.20 | wind | 9.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 28 | 67.21 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 29 | 67.21 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 30 | 67.21 | humidity | 50.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 31 | 67.21 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 32 | 67.21 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 39 | 67.23 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 45 | 67.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 46 | 67.54 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 48 | 67.55 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 58 | 67.60 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 59 | 67.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 82 | 67.82 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 83 | 67.82 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 100 | 67.89 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 105 | 67.92 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 106 | 67.92 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 111 | 67.94 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 15 |
| 113 | 67.95 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 117 | 67.95 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 127 | 67.97 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 148 | 68.00 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 12 |
| 183 | 68.04 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 197 | 68.06 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 214 | 68.08 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 251 | 68.11 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 273 | 68.13 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 292 | 68.15 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 293 | 68.15 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 308 | 68.17 | humidity | 80.0 | 4320 | < th | dose independent | sin | 4 | NA |
| 353 | 68.19 | humidity | 80.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 355 | 68.19 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 8 |
| 362 | 68.19 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 367 | 68.20 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 368 | 68.20 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 389 | 68.21 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 390 | 68.21 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 393 | 68.21 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 397 | 68.21 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 406 | 68.21 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 407 | 68.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 432 | 68.21 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 486 | 68.24 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 496 | 68.25 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 512 | 68.26 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 518 | 68.26 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 528 | 68.27 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 541 | 68.27 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 559 | 68.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 561 | 68.28 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 562 | 68.28 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 566 | 68.28 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 568 | 68.28 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 570 | 68.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 575 | 68.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 594 | 68.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 596 | 68.28 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 599 | 68.28 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 604 | 68.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 647 | 68.30 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 664 | 68.31 | wind | 9.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 693 | 68.32 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 707 | 68.32 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 733 | 68.34 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 747 | 68.35 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 748 | 68.35 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 752 | 68.35 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 770 | 68.36 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 988 | 68.44 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 16 |
| 999 | 68.44 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 16 |