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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0611100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0187) R2 : 0.0118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0916 (0.0393) R2dN8 : 0.0152 R2N8 : 0.0118
σ : 0.352
deviance : 56.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.37 0.346 2.99 -0.222 0.0105 1.07 -0.337 -4.79 0.113 22.5 999.1 1401 -- --
54.84 0.345 2.94 0.0331 0.0106 0.55 -0.302 -- 0.109 22 996.2 2555 -- --
54.82 0.345 2.99 -0.213 0.0107 1.09 -- -4.91 0.112 22.1 999.1 1374 -- --
55.14 0.346 2.94 0.0417 0.0417 0.458 -- -- 0.109 17.5 996.1 2429 -- --
54.83 0.345 2.99 -0.215 -- 1.1 -- -4.96 0.113 -- 999.1 1374 -- --
56.5 0.352 2.95 0.0309 0.000332 -- 0.272 -- 0.0956 10.3 -- -- -- --
56.74 0.353 2.95 0.043 0.0343 -- -- -- 0.0972 16.7 -- -- -- --
55.21 0.346 2.94 0.0429 -- 0.478 -- -- 0.11 -- 996.1 2500 -- --
55.18 0.346 2.95 -- 0.0388 0.472 -- -- 0.107 17.4 996.2 2471 -- --
56.8 0.352 2.95 0.0417 -- -- -- -- 0.0963 -- -- -- -- --
56.79 0.353 2.95 -- 0.0335 -- -- -- 0.0924 16.7 -- -- -- --
55.26 0.346 2.95 -- -- 0.472 -- -- 0.105 -- 996.1 2480 -- --
56.84 0.352 2.95 -- -- -- -- -- 0.0916 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.52 atmosphere 1000.0 10 > th dose independent rect. 21 23
3 51.80 humidity 90.0 10 < th dose dependent rect. 20 1
5 51.86 atmosphere 1005.0 10 > th dose independent rect. 20 1
6 51.89 humidity 90.0 10 < th dose independent rect. 20 1
9 51.92 temperature 10.0 1440 > th dose independent rect. 21 1
12 51.92 temperature 30.0 1440 < th dose independent rect. 21 1
16 51.92 humidity 50.0 1440 > th dose independent rect. 21 1
22 51.92 atmosphere 995.0 1440 > th dose independent rect. 21 1
23 51.92 radiation 1.0 1440 < th dose independent rect. 21 1
43 51.92 temperature 10.0 1440 > th dose independent rect. 22 23
46 51.92 temperature 30.0 30 < th dose dependent rect. 20 1
47 51.92 radiation 10.0 1440 < th dose dependent rect. 21 1
51 51.93 wind 5.0 30 < th dose independent rect. 20 1
53 51.93 temperature 20.0 30 > th dose independent rect. 20 1
54 51.93 atmosphere 995.0 30 > th dose dependent rect. 20 1
56 51.94 wind 1.0 30 > th dose independent rect. 20 1
58 51.94 temperature 10.0 30 > th dose independent rect. 20 1
60 51.94 temperature 30.0 30 < th dose independent rect. 20 1
61 51.94 humidity 50.0 30 > th dose independent rect. 20 1
64 51.94 atmosphere 995.0 30 > th dose independent rect. 20 1
66 51.94 atmosphere 1010.0 30 < th dose independent rect. 20 1
68 51.94 radiation 1.0 30 < th dose independent rect. 20 1
73 51.94 precipitation 0.1 30 < th dose independent rect. 20 1
74 51.94 temperature 10.0 30 > th dose independent rect. 21 23
75 51.94 wind 1.0 30 > th dose dependent rect. 20 1
76 51.94 wind 7.0 30 < th dose dependent rect. 20 1
79 51.94 radiation 1.0 30 < th dose dependent rect. 20 1
90 51.94 precipitation 0.1 30 < th dose dependent rect. 20 1
94 51.95 temperature 10.0 30 > th dose dependent rect. 20 1
99 51.95 radiation 1.0 43200 < th dose dependent rect. 21 1
104 51.96 humidity 50.0 30 > th dose dependent rect. 20 1
106 51.96 atmosphere 1015.0 30 < th dose dependent rect. 20 1
161 52.10 precipitation 0.1 30 < th dose independent rect. 21 23
165 52.10 precipitation 0.1 30 < th dose dependent rect. 21 23
168 52.13 wind 9.0 30 < th dose independent rect. 21 23
173 52.23 temperature 25.0 10 > th dose dependent rect. 20 10
182 52.50 temperature 25.0 30 > th dose dependent rect. 20 5
187 52.53 atmosphere 1000.0 720 > th dose independent rect. 1 8
195 52.61 atmosphere 1000.0 90 < th dose dependent rect. 8 6
202 52.70 humidity 50.0 90 < th dose independent rect. 12 2
212 52.77 humidity 50.0 90 < th dose dependent rect. 13 1
215 52.79 atmosphere 1000.0 90 < th dose independent rect. 12 1
216 52.79 atmosphere 1000.0 90 < th dose dependent rect. 12 1
244 53.01 temperature 25.0 30 > th dose independent rect. 20 9
256 53.05 precipitation 0.1 1440 < th dose independent rect. 21 1
257 53.05 precipitation 0.1 1440 < th dose dependent rect. 21 1
262 53.10 temperature 15.0 30 > th dose independent rect. 24 1
263 53.11 wind 7.0 30 < th dose independent rect. 24 1
266 53.11 temperature 30.0 30 < th dose independent rect. 24 1
267 53.11 humidity 50.0 30 > th dose independent rect. 24 1
271 53.11 atmosphere 995.0 30 > th dose independent rect. 24 1
272 53.11 radiation 1.0 30 < th dose independent rect. 24 1
277 53.11 precipitation 0.1 30 < th dose independent rect. 24 1
278 53.11 temperature 10.0 30 > th dose independent rect. 1 23
279 53.11 radiation 1.0 30 < th dose dependent rect. 24 1
284 53.11 precipitation 0.1 30 < th dose dependent rect. 24 1
287 53.14 wind 1.0 30 > th dose independent rect. 24 1
288 53.14 temperature 10.0 30 > th dose dependent rect. 24 1
289 53.14 humidity 50.0 30 > th dose dependent rect. 24 1
291 53.15 wind 9.0 30 < th dose dependent rect. 24 1
292 53.16 atmosphere 1010.0 30 < th dose independent rect. 24 1
299 53.18 atmosphere 995.0 30 > th dose dependent rect. 24 1
300 53.19 humidity 90.0 30 < th dose independent rect. 24 1
308 53.25 humidity 50.0 30 > th dose independent rect. 21 23
311 53.26 atmosphere 1015.0 30 < th dose dependent rect. 24 1
316 53.28 humidity 90.0 30 < th dose dependent rect. 24 1
320 53.33 wind 9.0 1440 < th dose independent rect. 21 1
323 53.33 wind 1.0 30 > th dose dependent rect. 24 1
324 53.34 temperature 10.0 1440 > th dose independent rect. 1 1
327 53.34 temperature 30.0 1440 < th dose independent rect. 1 1
331 53.34 humidity 50.0 1440 > th dose independent rect. 1 1
341 53.34 atmosphere 995.0 1440 > th dose independent rect. 1 1
342 53.34 radiation 1.0 1440 < th dose independent rect. 1 1
362 53.34 temperature 10.0 1440 > th dose independent rect. 2 23
365 53.34 radiation 1.0 1440 < th dose dependent rect. 1 1
395 53.40 wind 9.0 720 < th dose independent rect. 1 8
396 53.40 temperature 10.0 720 > th dose independent rect. 1 8
397 53.40 humidity 50.0 720 > th dose independent rect. 1 8
399 53.40 temperature 10.0 720 > th dose independent rect. 9 16
409 53.42 atmosphere 1000.0 720 > th dose independent rect. 21 16
414 53.47 temperature 30.0 30 < th dose dependent rect. 24 1
416 53.48 atmosphere 1015.0 720 < th dose independent rect. 1 8
438 53.60 temperature 10.0 720 > th dose independent rect. 13 8
439 53.60 temperature 10.0 720 > th dose independent rect. 21 16
481 53.68 temperature 25.0 30 > th dose independent rect. 20 5
484 53.69 wind 9.0 30 < th dose independent rect. 1 23
519 53.78 atmosphere 1000.0 270 < th dose independent rect. 9 5
542 53.84 atmosphere 1000.0 720 > th dose independent rect. 21 12
543 53.84 atmosphere 1015.0 30 < th dose independent rect. 21 23
545 53.84 temperature 30.0 30 > th dose dependent rect. 12 2
559 53.86 atmosphere 1000.0 270 < th dose independent rect. 6 8
560 53.86 atmosphere 1000.0 1440 < th dose dependent rect. 6 7
587 53.91 precipitation 0.1 720 < th dose independent rect. 1 8
590 53.91 precipitation 0.1 720 < th dose dependent rect. 1 8
610 53.95 atmosphere 1000.0 720 < th dose dependent rect. 7 2
613 53.96 atmosphere 1000.0 10 < th dose dependent sin 0 NA
615 53.96 atmosphere 1000.0 720 < th dose dependent rect. 5 5
636 54.00 atmosphere 995.0 90 > th dose dependent rect. 1 18
648 54.01 radiation 20.0 10 < th dose dependent rect. 21 23
652 54.02 atmosphere 995.0 30 > th dose dependent rect. 21 23
654 54.03 humidity 50.0 720 > th dose independent rect. 21 16
657 54.03 atmosphere 1000.0 270 < th dose dependent rect. 9 2
673 54.05 atmosphere 1000.0 720 > th dose independent rect. 5 4
676 54.05 precipitation 0.1 720 < th dose independent rect. 9 16
682 54.05 precipitation 0.1 720 < th dose dependent rect. 9 16
691 54.08 precipitation 0.1 720 < th dose independent rect. 13 8
693 54.08 atmosphere 1000.0 1440 < th dose dependent sin 5 NA
696 54.08 precipitation 0.1 720 < th dose dependent rect. 13 8
716 54.11 atmosphere 1000.0 90 > th dose independent rect. 5 14
724 54.12 atmosphere 1000.0 1440 < th dose independent rect. 8 5
734 54.12 atmosphere 995.0 90 > th dose dependent rect. 5 14
736 54.13 wind 7.0 4320 < th dose independent rect. 1 1
756 54.15 precipitation 0.1 720 < th dose independent rect. 21 16
767 54.15 precipitation 0.1 720 < th dose dependent rect. 21 16
775 54.17 wind 9.0 720 < th dose independent rect. 21 16
782 54.17 atmosphere 995.0 10 > th dose dependent rect. 1 19
807 54.20 wind 1.0 720 > th dose independent rect. 13 8
813 54.20 atmosphere 995.0 10 > th dose dependent rect. 12 8
831 54.21 atmosphere 1000.0 1440 > th dose independent rect. 7 6
859 54.23 radiation 40.0 720 < th dose independent rect. 1 8
880 54.24 wind 9.0 720 < th dose independent rect. 13 8
895 54.25 atmosphere 1000.0 720 > th dose independent rect. 3 6
897 54.25 atmosphere 1015.0 720 < th dose independent rect. 13 8
898 54.25 atmosphere 995.0 720 > th dose independent rect. 9 16
952 54.30 atmosphere 1000.0 10 > th dose independent rect. 12 8
953 54.30 atmosphere 1000.0 1440 < th dose independent rect. 18 19
965 54.31 radiation 20.0 30 < th dose independent rect. 21 23
982 54.32 atmosphere 1000.0 1440 < th dose dependent rect. 13 1
998 54.33 atmosphere 1000.0 1440 > th dose independent rect. 19 18