Os03g0605400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0605400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 336.94 | 0.862 | 4.64 | -0.407 | 0.482 | 0.481 | 1.72 | -4.29 | 0.359 | 5.44 | 1.011 | 1412 | -- | -- |
| 348.47 | 0.869 | 4.6 | 0.214 | 0.512 | 0.998 | 1.29 | -- | 0.408 | 5.9 | 0.1793 | 1388 | -- | -- |
| 344.03 | 0.864 | 4.64 | -0.401 | 0.495 | 0.475 | -- | -4.28 | 0.36 | 4.94 | 1.01 | 1417 | -- | -- |
| 354.23 | 0.877 | 4.6 | 0.113 | 0.555 | 1.27 | -- | -- | 0.45 | 5.86 | 0.2223 | 1398 | -- | -- |
| 356.86 | 0.88 | 4.64 | -0.361 | -- | 0.536 | -- | -4.11 | 0.367 | -- | 1.01 | 1411 | -- | -- |
| 366.28 | 0.897 | 4.54 | 0.353 | 0.47 | -- | 1.76 | -- | 0.585 | 5.58 | -- | -- | -- | -- |
| 373.48 | 0.905 | 4.55 | 0.359 | 0.486 | -- | -- | -- | 0.577 | 4.92 | -- | -- | -- | -- |
| 365.56 | 0.89 | 4.59 | 0.0903 | -- | 1.32 | -- | -- | 0.435 | -- | 0.23 | 1413 | -- | -- |
| 353.59 | 0.876 | 4.58 | -- | 0.492 | 1.34 | -- | -- | 0.414 | 5.84 | 0.19 | 1399 | -- | -- |
| 385.91 | 0.918 | 4.56 | 0.376 | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
| 376.87 | 0.908 | 4.56 | -- | 0.492 | -- | -- | -- | 0.537 | 4.9 | -- | -- | -- | -- |
| 365.51 | 0.89 | 4.59 | -- | -- | 1.35 | -- | -- | 0.426 | -- | 0.22 | 1418 | -- | -- |
| 389.64 | 0.921 | 4.57 | -- | -- | -- | -- | -- | 0.548 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 335.25 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 3 | 335.27 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 4 | 335.43 | wind | 7 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 6 | 335.89 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 3 | 9 |
| 11 | 336.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 14 | 336.74 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 19 | 336.95 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 20 | 337.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 23 | 337.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 27 | 337.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 29 | 337.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 30 | 337.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 37 | 337.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 38 | 337.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 53 | 337.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 90 | 337.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 97 | 337.66 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 119 | 337.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 162 | 337.84 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 166 | 337.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 170 | 337.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 171 | 337.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 180 | 337.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 195 | 337.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 250 | 338.06 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 294 | 338.27 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 303 | 338.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 307 | 338.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 318 | 338.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 338 | 338.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 345 | 338.72 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 346 | 338.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 357 | 338.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 381 | 339.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 385 | 339.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 389 | 339.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 458 | 339.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 462 | 339.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 464 | 339.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 505 | 339.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 523 | 339.84 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 527 | 339.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 552 | 339.90 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 632 | 340.31 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 633 | 340.31 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 3 | 13 |
| 649 | 340.38 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 17 |
| 670 | 340.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 672 | 340.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 689 | 340.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 780 | 341.14 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 9 |
| 828 | 341.52 | wind | 9 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 880 | 341.78 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 883 | 341.80 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 15 |
| 887 | 341.81 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 940 | 342.05 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |