Os03g0603100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome P-450.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0603100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Cytochrome P-450.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 383.5 | 0.92 | 4.13 | 4.7 | 1.72 | -3.12 | 1.18 | 6.08 | 0.851 | 16.2 | 22.07 | 1847 | -- | -- |
| 407.52 | 0.94 | 4.23 | 3.87 | 1.49 | -3.66 | 0.86 | -- | 0.805 | 15.8 | 12.4 | 7784 | -- | -- |
| 387.29 | 0.917 | 4.13 | 4.74 | 1.73 | -3.12 | -- | 6.18 | 0.866 | 16.1 | 22.03 | 1839 | -- | -- |
| 410.6 | 0.944 | 4.23 | 3.9 | 1.5 | -3.66 | -- | -- | 0.795 | 15.7 | 10.19 | 7742 | -- | -- |
| 490.34 | 1.03 | 4.1 | 4.89 | -- | -3.13 | -- | 5.8 | 0.839 | -- | 22.02 | 2701 | -- | -- |
| 624.34 | 1.17 | 4.46 | 2.02 | 1.55 | -- | 1.09 | -- | -0.218 | 15.5 | -- | -- | -- | -- |
| 627.91 | 1.17 | 4.46 | 2.04 | 1.55 | -- | -- | -- | -0.212 | 15.4 | -- | -- | -- | -- |
| 519.58 | 1.06 | 4.24 | 3.87 | -- | -3.78 | -- | -- | 0.719 | -- | 10.11 | 6956 | -- | -- |
| 639.03 | 1.18 | 4.44 | -- | 1.28 | -2.3 | -- | -- | -0.0965 | 15.9 | 9.327 | 1194 | -- | -- |
| 763.47 | 1.29 | 4.46 | 1.97 | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
| 737.09 | 1.27 | 4.51 | -- | 1.51 | -- | -- | -- | -0.439 | 15.4 | -- | -- | -- | -- |
| 702.85 | 1.23 | 4.5 | -- | -- | -2.16 | -- | -- | -0.298 | -- | 24.5 | 1250 | -- | -- |
| 865.81 | 1.37 | 4.51 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 362.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 364.20 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 365.68 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 6 | 373.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 7 | 373.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 23 | 377.52 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 25 | 377.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 27 | 378.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 45 | 379.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 97 | 383.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 139 | 385.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 357 | 390.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 367 | 390.61 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 390 | 391.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 512 | 393.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 522 | 393.68 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 552 | 394.31 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 567 | 394.53 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 576 | 394.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 595 | 394.96 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 629 | 395.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 643 | 395.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 744 | 396.76 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 758 | 397.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 785 | 397.25 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 806 | 397.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 834 | 397.75 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 838 | 397.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 934 | 398.71 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 942 | 398.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 969 | 399.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 972 | 399.04 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 991 | 399.30 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 22 |