Os03g0602400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0602400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.97 | 0.438 | 7.03 | 1.44 | 0.597 | -0.458 | -0.475 | -0.276 | 0.198 | 18.2 | 9.76 | 4 | -- | -- |
| 87.45 | 0.436 | 7.03 | 1.44 | 0.597 | -0.458 | -0.546 | -- | 0.198 | 18.2 | 9.76 | 4 | -- | -- |
| 87.51 | 0.436 | 7.03 | 1.44 | 0.595 | -0.45 | -- | -0.32 | 0.196 | 18.2 | 9.76 | 4 | -- | -- |
| 88.07 | 0.437 | 7.03 | 1.39 | 0.587 | -0.431 | -- | -- | 0.177 | 17.9 | 10 | 2 | -- | -- |
| 105.56 | 0.479 | 7.01 | 1.43 | -- | -0.447 | -- | -0.265 | 0.196 | -- | 10.18 | 4 | -- | -- |
| 94.8 | 0.456 | 7.02 | 1.44 | 0.751 | -- | 0.018 | -- | 0.172 | 15.6 | -- | -- | -- | -- |
| 94.8 | 0.456 | 7.02 | 1.44 | 0.751 | -- | -- | -- | 0.172 | 15.6 | -- | -- | -- | -- |
| 105.94 | 0.479 | 7.02 | 1.37 | -- | -0.451 | -- | -- | 0.163 | -- | 10.72 | 2 | -- | -- |
| 138.4 | 0.551 | 7.06 | -- | 0.572 | -0.516 | -- | -- | 0.0211 | 18.6 | 10.83 | 2 | -- | -- |
| 126.23 | 0.525 | 7.02 | 1.4 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 149.13 | 0.571 | 7.06 | -- | 0.723 | -- | -- | -- | 0.0122 | 15.6 | -- | -- | -- | -- |
| 155.25 | 0.582 | 7.05 | -- | -- | -0.475 | -- | -- | 0.00982 | -- | 10.72 | 2 | -- | -- |
| 178.25 | 0.623 | 7.06 | -- | -- | -- | -- | -- | -0.0037 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.27 | wind | 5.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 10 | 84.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 14 | 84.50 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 15 | 84.55 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 20 | 84.77 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 26 | 85.08 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 27 | 85.08 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 35 | 85.20 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 37 | 85.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 41 | 85.22 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 45 | 85.26 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 50 | 85.29 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 51 | 85.29 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 55 | 85.29 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 10 |
| 58 | 85.30 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 59 | 85.31 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 23 |
| 65 | 85.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 66 | 85.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 81 | 85.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 85 | 85.41 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 96 | 85.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 124 | 85.55 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 127 | 85.56 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 12 |
| 170 | 85.72 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 6 | NA |
| 172 | 85.73 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 177 | 85.74 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 6 | NA |
| 179 | 85.74 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 6 | NA |
| 186 | 85.76 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 187 | 85.76 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 17 |
| 213 | 85.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 217 | 85.85 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 232 | 85.91 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 233 | 85.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 238 | 85.92 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 254 | 85.99 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 7 |
| 267 | 86.03 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 274 | 86.04 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 281 | 86.05 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 287 | 86.06 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 298 | 86.09 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 313 | 86.13 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 339 | 86.19 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 341 | 86.19 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 359 | 86.22 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 6 | NA |
| 365 | 86.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 368 | 86.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 370 | 86.24 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 382 | 86.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 395 | 86.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 463 | 86.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 465 | 86.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 466 | 86.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 468 | 86.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 470 | 86.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 478 | 86.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 479 | 86.39 | radiation | 20.0 | 30 | < th | dose independent | rect. | 13 | 9 |
| 481 | 86.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 483 | 86.40 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 526 | 86.46 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 531 | 86.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 536 | 86.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 541 | 86.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 554 | 86.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 558 | 86.49 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 577 | 86.51 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 578 | 86.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 582 | 86.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 592 | 86.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 18 |
| 598 | 86.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 608 | 86.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 636 | 86.57 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 638 | 86.58 | radiation | 10.0 | 30 | > th | dose independent | sin | 23 | NA |
| 643 | 86.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 654 | 86.60 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 675 | 86.62 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 700 | 86.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 750 | 86.68 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 753 | 86.69 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 755 | 86.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 757 | 86.69 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 773 | 86.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 777 | 86.70 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 783 | 86.71 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 21 |
| 801 | 86.73 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 803 | 86.73 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 20 |
| 825 | 86.75 | temperature | 20.0 | 90 | > th | dose independent | rect. | 16 | 15 |
| 844 | 86.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 848 | 86.77 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 852 | 86.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 855 | 86.77 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 856 | 86.77 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 862 | 86.78 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 891 | 86.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 899 | 86.82 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 900 | 86.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 923 | 86.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 933 | 86.85 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 936 | 86.86 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 966 | 86.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 20 |
| 978 | 86.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 18 |