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Os03g0601000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.31 (0.0199) R2 : 0.77
β1 : 2.57 (0.073) R2dD : 0.649 R2D : 0.403
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.993 (0.0426) R2dN8 : 0.367 R2N8 : 0.121
σ : 0.374
deviance : 64.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.04 0.305 8.29 2.59 0.431 -0.664 0.582 -0.559 1.13 17.4 1.504 4307 -- --
42.38 0.303 8.29 2.73 0.435 -0.676 0.62 -- 1.14 17.5 1.52 4275 -- --
42.77 0.305 8.29 2.58 0.431 -0.657 -- -0.581 1.13 17 1.52 4312 -- --
43.28 0.306 8.29 2.72 0.437 -0.677 -- -- 1.14 17.5 1.52 4268 -- --
52.69 0.338 8.29 2.55 -- -0.705 -- -0.67 1.13 -- 1.52 4298 -- --
52.2 0.339 8.32 2.59 0.457 -- 0.576 -- 1 17.1 -- -- -- --
52.96 0.341 8.32 2.59 0.46 -- -- -- 1 16.8 -- -- -- --
53.35 0.34 8.29 2.72 -- -0.659 -- -- 1.13 -- 1.52 4287 -- --
167.61 0.603 8.31 -- 0.451 -1.48 -- -- 0.983 17.6 9.985 28382 -- --
64.17 0.374 8.31 2.57 -- -- -- -- 0.993 -- -- -- -- --
229.82 0.709 8.38 -- 0.414 -- -- -- 0.716 17 -- -- -- --
165.66 0.599 8.34 -- -- -1.66 -- -- 0.684 -- 9.99 47520 -- --
238.83 0.721 8.38 -- -- -- -- -- 0.707 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.86 wind 1.0 43200 < th dose independent rect. 5 1
2 40.93 radiation 20.0 14400 < th dose independent rect. 16 15
3 40.97 radiation 20.0 4320 > th dose dependent rect. 16 15
4 41.03 radiation 20.0 4320 < th dose independent rect. 16 17
6 41.17 precipitation 0.1 43200 > th dose independent rect. 14 4
7 41.17 precipitation 0.1 43200 < th dose independent rect. 14 4
8 41.17 precipitation 0.1 43200 < th dose dependent rect. 14 4
11 41.20 precipitation 0.1 43200 < th dose independent rect. 10 8
14 41.20 precipitation 0.1 43200 < th dose dependent rect. 10 8
21 41.22 radiation 20.0 14400 < th dose independent rect. 16 11
24 41.23 radiation 20.0 14400 < th dose independent rect. 16 4
25 41.23 precipitation 0.1 43200 > th dose independent rect. 10 8
26 41.23 radiation 20.0 14400 < th dose independent rect. 16 9
30 41.24 radiation 20.0 14400 < th dose independent rect. 16 2
43 41.27 radiation 30.0 4320 < th dose independent rect. 22 12
44 41.27 radiation 30.0 4320 < th dose independent rect. 18 16
47 41.28 radiation 30.0 4320 < th dose independent rect. 24 10
53 41.29 radiation 30.0 4320 < th dose independent rect. 4 6
58 41.30 radiation 30.0 4320 < th dose independent rect. 6 4
78 41.37 radiation 20.0 4320 < th dose independent sin 11 NA
87 41.42 radiation 20.0 4320 > th dose dependent rect. 16 1
102 41.43 precipitation 0.1 43200 > th dose dependent rect. 8 11
106 41.44 radiation 1.0 4320 > th dose dependent rect. 17 17
112 41.46 radiation 1.0 4320 > th dose dependent rect. 4 6
123 41.47 humidity 60.0 43200 > th dose independent rect. 15 2
158 41.53 radiation 40.0 4320 < th dose dependent rect. 18 15
159 41.54 radiation 40.0 4320 < th dose dependent rect. 22 11
168 41.55 radiation 40.0 4320 < th dose dependent rect. 4 5
169 41.55 radiation 40.0 4320 < th dose dependent rect. 2 7
222 41.61 precipitation 0.1 43200 > th dose dependent rect. 14 5
231 41.63 radiation 30.0 4320 > th dose dependent rect. 14 20
240 41.67 humidity 60.0 43200 < th dose independent rect. 15 2
241 41.67 humidity 70.0 14400 < th dose dependent rect. 18 2
303 41.72 humidity 70.0 14400 < th dose dependent rect. 18 13
396 41.79 humidity 70.0 14400 < th dose independent rect. 19 2
418 41.80 humidity 60.0 14400 < th dose dependent rect. 16 4
436 41.81 precipitation 0.1 43200 > th dose dependent rect. 14 3
439 41.82 humidity 70.0 14400 > th dose independent rect. 19 2
440 41.82 humidity 70.0 14400 > th dose independent rect. 19 10
447 41.83 humidity 70.0 14400 > th dose independent rect. 19 6
451 41.83 temperature 10.0 1440 > th dose dependent rect. 11 1
484 41.89 wind 9.0 43200 < th dose independent rect. 19 3
535 41.93 humidity 60.0 43200 > th dose independent rect. 14 20
568 41.96 radiation 1.0 4320 > th dose dependent sin 11 NA
572 41.97 radiation 10.0 4320 < th dose dependent rect. 22 9
583 41.98 humidity 60.0 43200 > th dose independent rect. 14 10
584 41.98 humidity 60.0 43200 < th dose independent rect. 14 10
592 41.98 radiation 10.0 4320 < th dose dependent rect. 2 6
610 41.99 humidity 50.0 14400 < th dose independent rect. 17 17
613 41.99 radiation 40.0 4320 < th dose dependent sin 11 NA
614 41.99 radiation 10.0 4320 < th dose dependent rect. 4 3
625 42.00 radiation 10.0 4320 < th dose dependent rect. 17 16
628 42.01 humidity 60.0 43200 < th dose independent rect. 14 7
632 42.01 radiation 1.0 4320 > th dose independent rect. 18 11
635 42.01 radiation 30.0 4320 > th dose dependent sin 12 NA
636 42.01 humidity 50.0 14400 < th dose dependent rect. 16 19
652 42.02 radiation 40.0 14400 > th dose dependent rect. 12 2
670 42.04 humidity 80.0 14400 > th dose dependent rect. 21 2
679 42.05 radiation 1.0 4320 > th dose independent rect. 18 1
710 42.06 humidity 80.0 14400 < th dose independent rect. 17 1
746 42.07 radiation 40.0 4320 < th dose dependent rect. 18 11
768 42.09 humidity 50.0 14400 > th dose independent rect. 17 16
775 42.09 temperature 30.0 270 < th dose dependent rect. 4 21
812 42.12 humidity 60.0 43200 < th dose independent rect. 14 20
850 42.14 wind 9.0 43200 > th dose independent rect. 19 4
868 42.14 precipitation 0.1 43200 > th dose dependent rect. 8 14
873 42.14 radiation 40.0 14400 > th dose dependent rect. 12 21
889 42.16 precipitation 0.1 43200 > th dose dependent rect. 14 8
895 42.17 radiation 40.0 14400 < th dose independent rect. 13 3
899 42.17 radiation 40.0 14400 < th dose independent rect. 13 12
979 42.18 temperature 30.0 270 < th dose dependent rect. 5 18