Os03g0600400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0600400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.2 | 0.195 | 12.2 | 1.15 | 0.743 | 0.24 | 0.277 | -0.0627 | 0.368 | 19.5 | 29.23 | 4342 | -- | -- |
| 17.01 | 0.192 | 12.2 | 1.17 | 0.752 | 0.228 | 0.278 | -- | 0.422 | 19.5 | 26.03 | 10213 | -- | -- |
| 17.42 | 0.194 | 12.2 | 1.15 | 0.742 | 0.243 | -- | -0.0565 | 0.368 | 19.5 | 29.08 | 4341 | -- | -- |
| 17.18 | 0.193 | 12.2 | 1.16 | 0.75 | 0.223 | -- | -- | 0.429 | 19.5 | 25.42 | 10227 | -- | -- |
| 46.94 | 0.319 | 12.2 | 1.17 | -- | 0.239 | -- | 0.101 | 0.398 | -- | 25.36 | 7287 | -- | -- |
| 18.67 | 0.203 | 12.2 | 1.19 | 0.745 | -- | 0.281 | -- | 0.361 | 19.4 | -- | -- | -- | -- |
| 18.89 | 0.204 | 12.2 | 1.19 | 0.745 | -- | -- | -- | 0.361 | 19.5 | -- | -- | -- | -- |
| 46.58 | 0.318 | 12.1 | 1.15 | -- | 0.232 | -- | -- | 0.429 | -- | 23.46 | 8726 | -- | -- |
| 36.04 | 0.28 | 12.3 | -- | 0.883 | 0.65 | -- | -- | 0.0844 | 20.2 | 66.65 | 38935 | -- | -- |
| 48.54 | 0.326 | 12.2 | 1.18 | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
| 56.11 | 0.35 | 12.2 | -- | 0.735 | -- | -- | -- | 0.229 | 19.6 | -- | -- | -- | -- |
| 57.21 | 0.352 | 12.2 | -- | -- | 0.827 | -- | -- | 0.00746 | -- | 59.89 | 46192 | -- | -- |
| 85.07 | 0.431 | 12.2 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.27 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 25 | 16.58 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 5 |
| 27 | 16.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 32 | 16.62 | temperature | 25.0 | 720 | < th | dose independent | rect. | 21 | 2 |
| 38 | 16.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 41 | 16.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 42 | 16.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 44 | 16.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 48 | 16.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 49 | 16.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 61 | 16.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 70 | 16.72 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 81 | 16.74 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 82 | 16.74 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 4 |
| 86 | 16.75 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 108 | 16.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 118 | 16.79 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 133 | 16.80 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 147 | 16.81 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 159 | 16.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 160 | 16.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 163 | 16.82 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 171 | 16.83 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 199 | 16.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 203 | 16.85 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 213 | 16.86 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 214 | 16.86 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 215 | 16.86 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 229 | 16.86 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 242 | 16.87 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 244 | 16.87 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 246 | 16.87 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 249 | 16.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 15 |
| 254 | 16.88 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 258 | 16.88 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 274 | 16.89 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 283 | 16.89 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 305 | 16.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 312 | 16.90 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 319 | 16.91 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 334 | 16.92 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 343 | 16.92 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 348 | 16.92 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 357 | 16.93 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 358 | 16.93 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 359 | 16.93 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 369 | 16.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 413 | 16.94 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 429 | 16.95 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 438 | 16.95 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 466 | 16.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 498 | 16.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 511 | 16.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 512 | 16.97 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 514 | 16.97 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 578 | 16.97 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 621 | 16.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 21 |
| 643 | 16.98 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 650 | 16.98 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 653 | 16.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 674 | 16.98 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 11 |
| 698 | 16.99 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 699 | 16.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 713 | 16.99 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 716 | 16.99 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 717 | 16.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 774 | 16.99 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 19 |
| 777 | 17.00 | radiation | 40.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 793 | 17.00 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 875 | 17.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 876 | 17.01 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 889 | 17.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 897 | 17.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 975 | 17.01 | atmosphere | 1005.0 | 43200 | < th | dose dependent | no | NA | NA |
| 998 | 17.01 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |