Os03g0598800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L15.
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Os03g0598800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L15.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88 | 0.441 | 12.5 | 0.47 | 0.893 | 0.613 | 0.796 | -0.855 | 0.106 | 17.5 | 19.9 | 2769 | -- | -- |
| 89.11 | 0.44 | 12.5 | 0.622 | 0.886 | 0.752 | 0.801 | -- | 0.137 | 17.4 | 19.7 | 2684 | -- | -- |
| 89.52 | 0.441 | 12.5 | 0.449 | 0.898 | 0.608 | -- | -0.939 | 0.104 | 17.4 | 19.9 | 2747 | -- | -- |
| 90.89 | 0.444 | 12.5 | 0.597 | 0.895 | 0.782 | -- | -- | 0.142 | 17.4 | 19.75 | 2648 | -- | -- |
| 131.14 | 0.533 | 12.5 | 0.504 | -- | 0.618 | -- | -0.662 | 0.0863 | -- | 20.1 | 2114 | -- | -- |
| 100.27 | 0.469 | 12.4 | 1.01 | 0.865 | -- | 0.968 | -- | 0.322 | 17.5 | -- | -- | -- | -- |
| 102.58 | 0.474 | 12.4 | 1.01 | 0.871 | -- | -- | -- | 0.326 | 17.5 | -- | -- | -- | -- |
| 131.5 | 0.534 | 12.5 | 0.66 | -- | 0.729 | -- | -- | 0.149 | -- | 20.05 | 1908 | -- | -- |
| 96.07 | 0.456 | 12.5 | -- | 0.904 | 1.03 | -- | -- | 0.0689 | 17.5 | 18.6 | 14200 | -- | -- |
| 141.99 | 0.557 | 12.4 | 0.981 | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
| 129.46 | 0.532 | 12.5 | -- | 0.854 | -- | -- | -- | 0.213 | 17.6 | -- | -- | -- | -- |
| 135.64 | 0.542 | 12.5 | -- | -- | 0.995 | -- | -- | 0.0324 | -- | 18.1 | 17853 | -- | -- |
| 167.38 | 0.604 | 12.4 | -- | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.68 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 85.76 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 4 | 85.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 5 | 86.05 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 8 | 86.48 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 11 | 86.64 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 13 | 86.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 21 | 86.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 31 | 87.19 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 32 | 87.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 34 | 87.27 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 38 | 87.34 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 40 | 87.38 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 54 | 87.65 | wind | 3 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 58 | 87.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 61 | 87.72 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 74 | 87.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 84 | 87.95 | wind | 3 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 90 | 87.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 92 | 88.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 100 | 88.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 101 | 88.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 102 | 88.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 116 | 88.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 154 | 88.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 159 | 88.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 161 | 88.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 211 | 88.35 | wind | 5 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 225 | 88.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 250 | 88.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 291 | 88.55 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 299 | 88.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 326 | 88.62 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 340 | 88.64 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 342 | 88.65 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 384 | 88.74 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 454 | 88.86 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 475 | 88.88 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 532 | 88.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 538 | 88.99 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 543 | 89.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 548 | 89.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 579 | 89.06 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 660 | 89.19 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 833 | 89.45 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 835 | 89.46 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 845 | 89.47 | radiation | 10 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 896 | 89.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 982 | 89.66 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 985 | 89.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |