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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0598100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ACR4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0314) R2 : 0.866
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.8 (0.149) R2dC : 0.338 R2C : 0.7
β3 : -1.72 (0.139) R2dE : 0.143 R2E : 0.518
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.428 (0.0668) R2dN8 : 0.0175 R2N8 : 0.0142
σ : 0.59
deviance : 160.49
__
_____
C
peak time of C : 6.36
E
wheather : temperature
threshold : 19.2
memory length : 276
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.4
open length of G : 6.67

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.76 0.553 12.2 0.811 2.74 -1.76 1.34 2.67 -0.326 6.51 19.43 272 12.2 6.87
148.45 0.567 12.1 0.799 2.83 -1.67 -0.509 -- -0.364 6.38 19 222 12.9 6.55
141.91 0.555 12.1 0.811 2.79 -1.73 -- 2.4 -0.323 6.44 19.4 277 12.2 6.77
148.44 0.567 12.2 0.678 2.79 -1.72 -- -- -0.366 6.41 19.39 279 12.3 6.7
206.45 0.669 12.1 1.14 -- -3.49 -- 2.33 -0.0473 -- 18.7 245 11.5 9.55
202.09 0.666 12.2 0.564 4.31 -- -0.706 -- -0.508 6.31 -- -- -- --
203.3 0.668 12.2 0.556 4.31 -- -- -- -0.506 6.32 -- -- -- --
176.96 0.62 12.1 1.14 -- -3.94 -- -- -0.221 -- 18.6 320 11.2 9
160.49 0.59 12.2 -- 2.8 -1.72 -- -- -0.428 6.36 19.2 276 12.4 6.67
1165.44 1.6 12.3 0.67 -- -- -- -- -0.413 -- -- -- -- --
211.45 0.68 12.2 -- 4.31 -- -- -- -0.568 6.32 -- -- -- --
192.7 0.647 12.2 -- -- -3.81 -- -- -0.306 -- 18.4 323 11.2 9.02
1177.29 1.6 12.3 -- -- -- -- -- -0.487 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.27 temperature 20.0 270 > th dose independent rect. 12 7
3 144.01 humidity 50.0 270 > th dose independent rect. 12 7
4 144.84 humidity 90.0 270 < th dose independent rect. 12 7
5 145.56 wind 1.0 270 > th dose dependent rect. 13 4
6 145.67 temperature 30.0 90 < th dose independent rect. 13 6
8 146.04 wind 5.0 270 > th dose independent rect. 13 4
13 146.92 humidity 90.0 270 < th dose independent rect. 13 4
14 147.07 precipitation 0.1 270 < th dose independent rect. 19 17
15 147.07 precipitation 0.1 270 < th dose dependent rect. 19 17
17 147.13 humidity 50.0 270 > th dose independent rect. 13 5
20 147.64 wind 1.0 270 > th dose dependent rect. 12 6
23 147.91 atmosphere 995.0 270 > th dose independent rect. 12 7
25 148.53 wind 1.0 270 > th dose independent rect. 12 7
27 148.61 precipitation 0.1 270 < th dose independent rect. 17 20
28 148.61 precipitation 0.1 270 < th dose dependent rect. 17 20
29 148.64 temperature 10.0 270 > th dose independent rect. 12 7
31 148.64 atmosphere 1015.0 270 < th dose independent rect. 12 7
32 148.64 temperature 10.0 270 > th dose independent rect. 19 17
33 148.64 atmosphere 995.0 270 > th dose independent rect. 19 17
38 148.75 humidity 50.0 270 > th dose independent rect. 13 18
40 148.96 wind 9.0 270 < th dose independent rect. 12 7
42 149.16 wind 9.0 270 < th dose independent rect. 19 17
44 149.38 temperature 30.0 270 < th dose independent rect. 13 4
49 149.65 humidity 50.0 270 > th dose independent rect. 19 17
54 149.82 radiation 40.0 90 < th dose independent rect. 13 6
57 150.05 wind 1.0 270 > th dose independent rect. 18 18
60 150.07 humidity 50.0 270 > th dose independent rect. 1 16
64 150.22 precipitation 0.1 270 < th dose independent rect. 12 7
65 150.22 precipitation 0.1 270 < th dose dependent rect. 12 7
67 150.45 atmosphere 995.0 270 > th dose independent rect. 13 4
78 150.62 wind 1.0 270 > th dose independent rect. 17 20
88 150.84 precipitation 0.1 270 < th dose independent rect. 17 8
89 150.84 precipitation 0.1 270 < th dose dependent rect. 17 8
94 151.01 wind 1.0 270 > th dose independent rect. 17 9
99 151.13 atmosphere 995.0 270 > th dose dependent rect. 12 7
104 151.40 temperature 10.0 270 > th dose independent rect. 13 4
106 151.40 atmosphere 1010.0 270 < th dose independent rect. 13 4
108 151.40 temperature 10.0 270 > th dose independent rect. 17 20
117 151.59 atmosphere 995.0 270 > th dose independent rect. 1 16
119 151.74 wind 9.0 270 < th dose independent rect. 1 16
121 151.78 wind 9.0 270 < th dose independent rect. 13 4
122 151.83 radiation 40.0 10 < th dose dependent rect. 13 7
123 151.84 precipitation 0.1 270 < th dose independent rect. 13 4
124 151.84 precipitation 0.1 270 < th dose dependent rect. 13 4
125 151.94 precipitation 0.1 270 < th dose independent rect. 8 15
126 151.94 precipitation 0.1 270 < th dose dependent rect. 8 15
129 152.06 radiation 1.0 270 > th dose independent rect. 7 6
132 152.08 atmosphere 995.0 270 > th dose independent rect. 13 18
133 152.11 wind 9.0 270 < th dose independent rect. 17 8
136 152.20 temperature 30.0 270 < th dose independent rect. 19 16
138 152.22 atmosphere 995.0 270 > th dose dependent rect. 13 4
144 152.38 wind 9.0 270 < th dose independent rect. 17 20
145 152.38 atmosphere 995.0 270 > th dose independent rect. 17 20
146 152.38 precipitation 0.1 270 < th dose independent rect. 16 23
147 152.38 precipitation 0.1 270 < th dose dependent rect. 16 23
148 152.40 temperature 10.0 270 > th dose independent rect. 17 8
149 152.40 radiation 20.0 270 < th dose independent rect. 17 8
152 152.40 temperature 10.0 270 > th dose independent rect. 1 16
153 152.40 atmosphere 1015.0 270 < th dose independent rect. 1 16
156 152.56 temperature 10.0 270 > th dose independent rect. 7 6
157 152.56 atmosphere 995.0 270 > th dose independent rect. 7 6
158 152.56 atmosphere 1015.0 270 < th dose independent rect. 7 6
159 152.56 temperature 10.0 270 > th dose independent rect. 13 18
161 152.63 precipitation 0.1 270 < th dose independent rect. 7 6
163 152.63 precipitation 0.1 270 < th dose dependent rect. 7 6
191 152.90 temperature 30.0 10 < th dose independent rect. 13 7
197 153.02 radiation 40.0 270 < th dose dependent rect. 17 8
201 153.10 wind 1.0 270 > th dose independent rect. 7 6
204 153.17 wind 9.0 270 < th dose independent rect. 13 18
215 153.39 wind 9.0 270 < th dose independent rect. 7 6
237 153.55 humidity 50.0 270 > th dose independent rect. 17 20
244 153.78 wind 1.0 10 > th dose dependent rect. 14 7
246 153.80 atmosphere 995.0 270 > th dose independent rect. 17 8
251 153.93 radiation 40.0 90 < th dose dependent rect. 13 6
260 154.02 humidity 50.0 270 > th dose independent rect. 17 8
280 154.27 precipitation 0.1 270 < th dose independent rect. 1 16
283 154.27 precipitation 0.1 270 < th dose dependent rect. 1 16
284 154.30 humidity 50.0 90 > th dose dependent rect. 13 6
302 154.46 atmosphere 1015.0 270 < th dose independent rect. 23 9
306 154.58 temperature 20.0 270 > th dose independent rect. 15 1
307 154.59 humidity 50.0 270 > th dose independent rect. 15 1
339 154.86 temperature 10.0 270 > th dose independent rect. 23 9
340 154.86 temperature 30.0 270 < th dose independent rect. 23 9
341 154.86 humidity 50.0 270 > th dose independent rect. 23 9
343 154.86 atmosphere 995.0 270 > th dose independent rect. 23 9
344 154.86 temperature 10.0 270 > th dose independent rect. 8 15
347 154.91 temperature 20.0 10 > th dose independent rect. 14 6
348 154.91 wind 9.0 270 < th dose independent rect. 23 9
354 155.05 humidity 50.0 270 > th dose dependent rect. 22 10
374 155.22 radiation 40.0 270 < th dose independent rect. 13 4
377 155.23 radiation 40.0 10 < th dose independent rect. 13 7
378 155.23 radiation 40.0 270 < th dose independent rect. 23 9
393 155.31 humidity 50.0 270 > th dose independent rect. 7 6
419 155.53 radiation 1.0 270 > th dose independent rect. 18 19
431 155.62 atmosphere 1015.0 270 < th dose independent rect. 13 18
476 156.09 wind 3.0 10 > th dose independent rect. 13 7
510 156.27 wind 9.0 270 < th dose independent rect. 8 15
521 156.38 temperature 30.0 270 < th dose independent rect. 18 7
547 156.58 temperature 30.0 270 < th dose independent rect. 15 1
572 156.71 precipitation 0.1 270 < th dose independent rect. 23 9
573 156.71 precipitation 0.1 270 < th dose dependent rect. 23 9
591 156.76 temperature 10.0 270 > th dose dependent rect. 12 7
598 156.79 radiation 1.0 270 > th dose independent rect. 17 21
599 156.79 atmosphere 995.0 10 > th dose dependent rect. 13 7
619 156.93 humidity 70.0 10 > th dose independent rect. 13 6
637 157.01 radiation 40.0 270 < th dose independent rect. 13 18
661 157.24 humidity 50.0 10 > th dose dependent rect. 13 7
692 157.42 humidity 50.0 270 > th dose independent rect. 8 4
716 157.53 atmosphere 995.0 10 > th dose independent rect. 14 6
720 157.59 wind 1.0 270 > th dose independent rect. 8 16
748 157.77 precipitation 0.1 270 < th dose independent rect. 13 18
749 157.77 precipitation 0.1 270 < th dose dependent rect. 13 18
754 157.80 precipitation 0.1 10 < th dose independent rect. 20 18
755 157.80 precipitation 0.1 10 < th dose dependent rect. 20 18
762 157.85 atmosphere 1015.0 270 < th dose independent rect. 12 20
812 158.06 radiation 1.0 90 < th dose independent rect. 5 14
826 158.16 radiation 20.0 10 < th dose dependent sin 23 NA
865 158.39 radiation 40.0 10 < th dose dependent rect. 13 19
869 158.45 temperature 10.0 270 > th dose independent rect. 9 2
870 158.45 atmosphere 995.0 270 > th dose independent rect. 9 2
871 158.45 atmosphere 1015.0 270 < th dose independent rect. 9 2
873 158.45 temperature 10.0 270 > th dose independent rect. 11 22
891 158.50 temperature 10.0 270 > th dose dependent rect. 13 4
905 158.57 temperature 10.0 10 > th dose independent rect. 14 6
907 158.57 atmosphere 1010.0 10 < th dose independent rect. 14 6
909 158.57 temperature 10.0 10 > th dose independent rect. 20 18
910 158.57 atmosphere 995.0 10 > th dose independent rect. 20 18
924 158.71 wind 9.0 270 < th dose independent rect. 9 2
927 158.72 radiation 40.0 10 < th dose dependent rect. 13 21
976 158.96 precipitation 0.1 10 < th dose independent rect. 14 6
978 158.96 precipitation 0.1 10 < th dose dependent rect. 14 6
980 158.97 radiation 1.0 90 < th dose dependent rect. 5 14
981 158.98 atmosphere 995.0 270 > th dose independent rect. 15 1