Os03g0597800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0597800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 519.32 | 1.07 | 3.97 | 1.34 | 0.257 | -2.51 | 0.0705 | -4.72 | -0.557 | 21 | 20.8 | 5996 | -- | -- |
| 541.44 | 1.08 | 4.19 | 0.475 | 0.261 | -1.85 | -0.17 | -- | -0.895 | 20.8 | 21.8 | 5972 | -- | -- |
| 519.33 | 1.06 | 3.97 | 1.33 | 0.256 | -2.52 | -- | -4.72 | -0.558 | 21.2 | 20.79 | 6002 | -- | -- |
| 538.32 | 1.08 | 4.19 | 0.751 | 0.246 | -1.57 | -- | -- | -0.78 | 21.8 | 21.84 | 4726 | -- | -- |
| 523.11 | 1.07 | 3.96 | 1.32 | -- | -2.53 | -- | -4.76 | -0.561 | -- | 20.8 | 6043 | -- | -- |
| 600.91 | 1.15 | 4.05 | 1.7 | 0.278 | -- | 0.119 | -- | -0.206 | 21.4 | -- | -- | -- | -- |
| 600.95 | 1.15 | 4.05 | 1.7 | 0.276 | -- | -- | -- | -0.206 | 21.6 | -- | -- | -- | -- |
| 541.5 | 1.08 | 4.18 | 0.808 | -- | -1.53 | -- | -- | -0.787 | -- | 22.01 | 4777 | -- | -- |
| 547.29 | 1.09 | 4.22 | -- | 0.235 | -1.92 | -- | -- | -0.94 | 21.5 | 21.5 | 5974 | -- | -- |
| 605.47 | 1.15 | 4.05 | 1.7 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 676.75 | 1.22 | 4.1 | -- | 0.282 | -- | -- | -- | -0.395 | 22.1 | -- | -- | -- | -- |
| 550.19 | 1.09 | 4.21 | -- | -- | -2 | -- | -- | -0.914 | -- | 21.1 | 6607 | -- | -- |
| 681.54 | 1.22 | 4.09 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 522.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 2 | 522.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 3 | 523.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 4 | 523.27 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 6 | 523.54 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 9 | 523.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 11 | 524.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 10 |
| 14 | 524.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 23 | 524.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 114 | 527.11 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 115 | 527.14 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 121 | 527.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 122 | 527.24 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 208 | 528.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 271 | 529.07 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 286 | 529.32 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 301 | 529.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 360 | 529.93 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 5 |
| 376 | 529.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 463 | 530.47 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 465 | 530.48 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 529 | 530.85 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 551 | 531.00 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 712 | 532.03 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 713 | 532.03 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 14 |
| 758 | 532.33 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 765 | 532.38 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 770 | 532.39 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 791 | 532.48 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 839 | 532.73 | humidity | 60 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 979 | 533.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |