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Os03g0597200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.6 (0.0228) R2 : 0.611
β1 : 1.63 (0.0863) R2dD : 0.348 R2D : 0.244
β2 : 0.838 (0.0562) R2dC : 0.195 R2C : 0.237
β3 : 1.78 (0.152) R2dE : 0.132 R2E : 0.0675
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00896 (0.0495) R2dN8 : 7.29e-05 R2N8 : -0.00266
σ : 0.422
deviance : 82.2
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C
peak time of C : 21.3
E
wheather : temperature
threshold : 20.79
memory length : 29
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.75 0.414 8.55 1.88 0.829 1.03 -0.779 -1.81 0.184 20.5 26.3 10 -- --
82.47 0.423 8.58 1.58 0.797 1.16 -1.08 -- 0.0807 20.9 24.55 10 -- --
79.37 0.418 8.55 1.94 0.824 0.988 -- -2.09 0.185 20.7 26.3 10 -- --
82.2 0.422 8.6 1.63 0.838 1.78 -- -- 0.00896 21.3 20.79 29 -- --
116.48 0.505 8.52 1.94 -- 1.28 -- -1.83 0.192 -- 24.9 7 -- --
101.92 0.473 8.64 1.31 0.921 -- -1.02 -- -0.13 21.7 -- -- -- --
105.81 0.482 8.64 1.34 0.924 -- -- -- -0.129 21.8 -- -- -- --
120.41 0.511 8.57 1.67 -- 1.7 -- -- 0.064 -- 22.5 2 -- --
146.62 0.567 8.66 -- 0.872 0.831 -- -- -0.219 21.6 21.4 28 -- --
156.72 0.585 8.61 1.35 -- -- -- -- -0.13 -- -- -- -- --
153.42 0.579 8.67 -- 0.928 -- -- -- -0.279 21.9 -- -- -- --
188.89 0.642 8.62 -- -- 1.1 -- -- -0.177 -- 22.5 10 -- --
205.01 0.668 8.65 -- -- -- -- -- -0.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.83 temperature 25 10 < th dose dependent sin 17 NA
7 76.62 temperature 25 10 < th dose dependent rect. 10 18
11 76.81 temperature 25 10 < th dose dependent rect. 8 20
14 76.84 temperature 25 10 < th dose dependent rect. 6 23
26 77.18 temperature 30 10 < th dose dependent rect. 21 23
35 77.38 temperature 10 10 > th dose dependent sin 16 NA
44 77.60 temperature 25 90 < th dose dependent rect. 11 14
64 77.88 temperature 25 10 < th dose dependent rect. 11 23
67 77.91 temperature 25 10 < th dose dependent rect. 3 23
70 77.95 temperature 25 10 < th dose dependent no NA NA
74 77.99 temperature 25 10 < th dose dependent rect. 23 23
76 78.01 temperature 25 10 < th dose dependent rect. 17 23
77 78.02 temperature 25 10 < th dose dependent rect. 19 23
79 78.04 temperature 25 10 < th dose dependent rect. 13 23
87 78.13 temperature 25 10 < th dose dependent rect. 15 23
101 78.25 wind 9 43200 > th dose dependent rect. 17 11
117 78.34 temperature 25 10 < th dose dependent rect. 1 23
130 78.49 wind 9 43200 > th dose dependent rect. 17 7
153 78.64 humidity 50 43200 < th dose independent rect. 14 17
171 78.74 humidity 50 43200 < th dose dependent rect. 20 10
180 78.81 humidity 50 43200 > th dose independent rect. 24 5
182 78.82 humidity 50 43200 < th dose independent rect. 17 15
183 78.82 wind 9 43200 > th dose dependent rect. 20 3
186 78.87 humidity 60 43200 > th dose independent rect. 5 5
192 78.91 humidity 80 43200 < th dose dependent rect. 22 1
193 78.91 humidity 50 43200 < th dose dependent rect. 17 15
197 78.94 temperature 10 10 > th dose dependent no NA NA
203 78.98 humidity 50 43200 > th dose independent rect. 14 17
204 78.98 humidity 60 43200 < th dose dependent rect. 14 1
210 79.00 humidity 70 43200 < th dose dependent rect. 5 5
214 79.02 humidity 50 43200 > th dose independent rect. 17 14
217 79.04 humidity 60 43200 < th dose independent rect. 5 5
226 79.08 humidity 50 43200 < th dose independent rect. 14 8
234 79.10 humidity 50 43200 < th dose independent sin 13 NA
238 79.11 humidity 80 43200 < th dose dependent rect. 5 1
240 79.11 humidity 60 43200 < th dose dependent rect. 12 20
249 79.14 humidity 50 43200 < th dose independent rect. 20 14
286 79.24 humidity 50 43200 < th dose independent rect. 14 4
290 79.25 humidity 60 43200 > th dose independent rect. 23 1
308 79.28 wind 9 43200 > th dose dependent rect. 17 4
325 79.32 wind 7 43200 > th dose independent rect. 20 1
327 79.32 humidity 50 43200 < th dose independent rect. 20 9
336 79.34 temperature 20 4320 < th dose dependent rect. 2 1
338 79.35 humidity 60 43200 < th dose dependent rect. 4 14
344 79.36 wind 9 43200 > th dose independent rect. 17 11
347 79.36 humidity 70 43200 < th dose dependent rect. 9 1
348 79.36 temperature 20 4320 < th dose dependent rect. 23 5
352 79.37 humidity 60 43200 < th dose dependent rect. 12 5
365 79.39 humidity 60 43200 < th dose dependent rect. 12 11
373 79.39 humidity 60 43200 < th dose dependent rect. 22 20
378 79.40 humidity 50 43200 > th dose independent rect. 14 4
390 79.40 humidity 60 43200 < th dose dependent rect. 4 20
392 79.41 humidity 50 43200 > th dose independent rect. 14 7
401 79.42 humidity 50 43200 > th dose independent sin 14 NA
405 79.42 humidity 60 43200 < th dose dependent rect. 12 9
415 79.43 humidity 60 43200 < th dose independent rect. 22 1
478 79.46 humidity 60 43200 < th dose dependent no NA NA
479 79.46 humidity 70 43200 < th dose dependent rect. 7 1
528 79.49 humidity 80 43200 < th dose dependent rect. 21 10
537 79.50 humidity 50 43200 > th dose independent sin 11 NA
540 79.50 humidity 50 43200 > th dose independent rect. 20 14
555 79.51 humidity 60 43200 < th dose dependent sin 20 NA
572 79.52 humidity 50 43200 < th dose dependent sin 11 NA
601 79.54 wind 9 43200 < th dose independent rect. 17 11
624 79.55 humidity 60 43200 < th dose dependent rect. 22 1
786 79.68 radiation 20 14400 < th dose dependent rect. 24 5
853 79.72 temperature 20 4320 < th dose dependent rect. 23 10
879 79.75 humidity 50 43200 < th dose independent rect. 17 5
910 79.78 humidity 70 43200 < th dose independent rect. 6 1
915 79.78 humidity 50 43200 < th dose independent rect. 19 23
944 79.80 wind 7 43200 < th dose independent rect. 20 1
960 79.81 humidity 50 43200 < th dose independent no NA NA
965 79.81 humidity 50 43200 < th dose independent rect. 3 19