Os03g0596800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0596800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.29 | 0.491 | 6.87 | -0.489 | 1.97 | 1.34 | -0.407 | -1.62 | -0.0176 | 3.18 | 25.11 | 5305 | -- | -- |
| 111.48 | 0.492 | 6.82 | -0.0388 | 2.01 | 1.19 | -0.494 | -- | 0.0327 | 3.02 | 24.73 | 5839 | -- | -- |
| 109.45 | 0.487 | 6.87 | -0.526 | 1.98 | 1.32 | -- | -1.92 | -0.0125 | 3.2 | 25.8 | 5364 | -- | -- |
| 111.46 | 0.492 | 6.81 | -0.0562 | 1.97 | 1.3 | -- | -- | 0.054 | 3.2 | 24.8 | 5110 | -- | -- |
| 318.49 | 0.831 | 6.87 | -0.442 | -- | 1.82 | -- | -1.8 | -0.00418 | -- | 26.23 | 3963 | -- | -- |
| 157.03 | 0.587 | 6.75 | 0.511 | 2.05 | -- | -0.398 | -- | 0.352 | 3 | -- | -- | -- | -- |
| 157.56 | 0.588 | 6.75 | 0.52 | 2.05 | -- | -- | -- | 0.354 | 3.01 | -- | -- | -- | -- |
| 322.73 | 0.837 | 6.85 | 0.0255 | -- | 1.76 | -- | -- | 0.0853 | -- | 26.2 | 3953 | -- | -- |
| 111.45 | 0.492 | 6.82 | -- | 1.99 | 1.26 | -- | -- | 0.0599 | 3.18 | 24.8 | 5111 | -- | -- |
| 399.28 | 0.934 | 6.74 | 0.608 | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
| 164.69 | 0.6 | 6.76 | -- | 2.06 | -- | -- | -- | 0.296 | 3.01 | -- | -- | -- | -- |
| 281.51 | 0.781 | 6.83 | -- | -- | 2.18 | -- | -- | -0.383 | -- | 25.6 | 1116 | -- | -- |
| 409.02 | 0.944 | 6.76 | -- | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 6 | 102.76 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 45 | 107.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 53 | 107.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 62 | 107.71 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 96 | 108.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 99 | 108.95 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 102 | 108.99 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 111 | 109.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 112 | 109.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 126 | 109.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 168 | 109.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 172 | 109.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 16 |
| 175 | 109.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 184 | 109.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 210 | 109.80 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 219 | 109.83 | temperature | 25 | 4320 | > th | dose dependent | sin | 15 | NA |
| 259 | 110.02 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 288 | 110.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 3 |
| 311 | 110.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 20 |
| 329 | 110.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 475 | 110.85 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 17 |
| 563 | 111.15 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 18 |
| 652 | 111.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 760 | 111.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 773 | 111.66 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 774 | 111.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 803 | 111.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 816 | 111.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 23 |
| 830 | 111.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 22 |
| 842 | 111.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 23 |
| 848 | 111.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 854 | 111.78 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 866 | 111.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 917 | 111.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 936 | 111.88 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 955 | 111.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 986 | 111.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 23 |