Os03g0595200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0595200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.38 | 0.212 | 10.3 | -0.034 | 0.618 | 0.497 | 0.486 | -0.544 | 0.0252 | 4.4 | 25.7 | 773 | -- | -- |
| 20.74 | 0.212 | 10.3 | 0.112 | 0.633 | 0.466 | 0.514 | -- | 0.0673 | 4.43 | 25.74 | 740 | -- | -- |
| 20.89 | 0.213 | 10.3 | -0.0654 | 0.572 | 0.517 | -- | -0.665 | 0.0235 | 4.23 | 25.92 | 882 | -- | -- |
| 21.4 | 0.215 | 10.3 | 0.1 | 0.531 | 0.475 | -- | -- | 0.0771 | 3.98 | 26 | 966 | -- | -- |
| 33.48 | 0.269 | 10.3 | -0.1 | -- | 0.708 | -- | -0.616 | -0.0528 | -- | 25.5 | 1115 | -- | -- |
| 27.16 | 0.244 | 10.2 | 0.252 | 0.584 | -- | 0.321 | -- | 0.218 | 2.99 | -- | -- | -- | -- |
| 27.5 | 0.246 | 10.3 | 0.245 | 0.584 | -- | -- | -- | 0.216 | 2.93 | -- | -- | -- | -- |
| 33.9 | 0.271 | 10.3 | 0.0789 | -- | 0.65 | -- | -- | 0.00465 | -- | 25.52 | 1118 | -- | -- |
| 21.67 | 0.217 | 10.3 | -- | 0.538 | 0.48 | -- | -- | 0.07 | 3.95 | 26 | 974 | -- | -- |
| 47.16 | 0.321 | 10.2 | 0.27 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 29.08 | 0.252 | 10.3 | -- | 0.589 | -- | -- | -- | 0.189 | 2.93 | -- | -- | -- | -- |
| 34.05 | 0.272 | 10.3 | -- | -- | 0.67 | -- | -- | -0.0101 | -- | 25.53 | 1125 | -- | -- |
| 49.08 | 0.327 | 10.3 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.27 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 16 |
| 2 | 20.29 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 7 | 20.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 13 | 20.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 22 | 20.44 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 27 | 20.47 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 3 |
| 40 | 20.53 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 49 | 20.55 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 63 | 20.62 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 94 | 20.71 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 112 | 20.75 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 17 |
| 121 | 20.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 144 | 20.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 162 | 20.83 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 163 | 20.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 190 | 20.88 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 21 |
| 225 | 20.92 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 21 |
| 252 | 20.95 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 23 |
| 259 | 20.96 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 329 | 21.03 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 11 |
| 337 | 21.04 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 350 | 21.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 351 | 21.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 364 | 21.06 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 23 |
| 425 | 21.11 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 442 | 21.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 443 | 21.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 461 | 21.14 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 466 | 21.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 615 | 21.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 667 | 21.25 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 23 |
| 751 | 21.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 771 | 21.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 837 | 21.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 7 |