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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0594100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0521) R2 : 0.782
β1 : 5.77 (0.201) R2dD : 0.51 R2D : 0.337
β2 : 3.42 (0.123) R2dC : 0.369 R2C : 0.35
β3 : 2.31 (0.226) R2dE : 0.105 R2E : -0.0799
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.69 (1.27) R2dD*E : 0.0401 R2D*E : -0.111
γ1 : 0.378 (0.106) R2dN8 : 0.00814 R2N8 : -0.0219
σ : 0.917
deviance : 387.39
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_____
C
peak time of C : 8.54
E
wheather : atmosphere
threshold : 1000
memory length : 87
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.04
open length of G : 22.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
387.37 0.925 6.07 5.78 3.41 2.35 -0.165 -7.9 0.368 8.54 1000 88 3.05 22.8
426.75 0.97 6.18 5.14 3.34 0.979 -0.0849 -- 0.293 8.72 1000 88 3.05 22.8
387.39 0.917 6.07 5.77 3.42 2.31 -- -7.69 0.378 8.54 1000 87 3.04 22.8
412.72 0.946 6.16 5.29 3.35 1.15 -- -- 0.377 8.71 1001 73 3.37 22.3
1034.39 1.5 6.16 5.78 -- 2.25 -- -7.72 0.435 -- 1000 81 2.95 22.8
473.88 1.02 6.17 5.01 3.35 -- -0.0687 -- 0.347 8.89 -- -- -- --
473.9 1.02 6.17 5.01 3.35 -- -- -- 0.347 8.89 -- -- -- --
508.6 1.05 6.24 5.74 -- 2.65 -- -- 0.0708 -- 997.7 133 3.37 9.99
1092.79 1.54 6.27 -- 3.38 1.5 -- -- -0.158 8.54 993.6 107 2.49 23.2
1113.68 1.56 6.26 5.01 -- -- -- -- 0.37 -- -- -- -- --
1135.75 1.58 6.29 -- 3.36 -- -- -- -0.211 8.78 -- -- -- --
1117.06 1.56 6.38 -- -- 2.52 -- -- -0.152 -- 990.5 66 3.4 10
1776.06 1.97 6.38 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 394.09 atmosphere 1000.0 90 > th dose independent rect. 3 23
2 400.22 atmosphere 1000.0 10 > th dose independent rect. 4 22
3 401.86 wind 9.0 14400 < th dose independent rect. 18 20
7 404.07 wind 9.0 14400 > th dose independent rect. 18 20
17 405.58 wind 9.0 14400 > th dose dependent rect. 18 20
25 406.95 wind 9.0 14400 < th dose independent rect. 15 23
28 407.15 atmosphere 1000.0 270 > th dose independent rect. 3 19
36 408.25 wind 9.0 14400 < th dose independent rect. 4 21
39 408.37 wind 9.0 14400 < th dose independent rect. 22 23
40 408.39 wind 9.0 14400 < th dose independent rect. 4 19
42 408.45 wind 9.0 14400 < th dose independent rect. 4 17
47 408.51 wind 9.0 14400 > th dose independent rect. 15 23
51 408.55 wind 9.0 14400 < th dose independent rect. 10 23
55 408.57 wind 9.0 14400 < th dose independent no NA NA
76 408.78 wind 9.0 14400 < th dose independent rect. 7 23
88 408.93 wind 9.0 14400 < th dose independent rect. 12 23
100 409.23 wind 7.0 14400 > th dose dependent sin 2 NA
103 409.26 wind 9.0 14400 < th dose independent sin 23 NA
121 409.53 wind 9.0 14400 > th dose independent rect. 22 23
128 409.65 wind 9.0 14400 < th dose independent rect. 22 17
134 409.68 wind 9.0 14400 > th dose independent rect. 3 22
137 409.71 wind 9.0 14400 > th dose independent no NA NA
139 409.71 wind 9.0 14400 > th dose independent rect. 9 23
142 409.73 wind 9.0 14400 > th dose independent rect. 3 18
149 409.74 wind 9.0 14400 > th dose independent rect. 7 23
179 409.91 wind 9.0 14400 < th dose independent rect. 10 15
198 410.01 wind 7.0 14400 > th dose dependent rect. 22 18
213 410.13 wind 9.0 14400 > th dose independent rect. 12 23
233 410.31 wind 7.0 14400 > th dose dependent rect. 1 15
248 410.37 wind 9.0 14400 > th dose dependent rect. 15 23
260 410.42 wind 9.0 14400 < th dose independent rect. 4 11
269 410.53 wind 9.0 14400 > th dose independent rect. 9 16
297 410.69 wind 9.0 14400 > th dose independent rect. 9 12
383 411.67 wind 9.0 14400 > th dose dependent no NA NA
384 411.67 wind 9.0 14400 > th dose dependent rect. 3 22
385 411.67 wind 9.0 14400 > th dose dependent rect. 9 22
395 411.71 wind 9.0 14400 > th dose independent sin 21 NA
424 411.86 wind 7.0 14400 > th dose dependent rect. 10 7
471 412.20 wind 9.0 14400 > th dose dependent rect. 12 23
494 412.44 wind 1.0 43200 < th dose dependent rect. 10 2
519 412.56 wind 7.0 14400 > th dose dependent rect. 10 10
542 412.66 precipitation 0.1 90 < th dose independent rect. 3 23
543 412.66 precipitation 0.1 90 < th dose dependent rect. 3 23
579 413.03 humidity 80.0 14400 < th dose independent rect. 22 3
582 413.08 temperature 10.0 90 > th dose dependent rect. 2 1
596 413.24 humidity 80.0 14400 < th dose independent rect. 21 10
612 413.51 wind 1.0 43200 < th dose independent rect. 10 2
669 414.04 atmosphere 995.0 90 > th dose dependent rect. 2 1
721 414.33 humidity 80.0 14400 > th dose independent rect. 22 9
724 414.35 atmosphere 1000.0 90 > th dose independent rect. 2 1
743 414.41 humidity 80.0 14400 < th dose dependent rect. 22 1
753 414.49 precipitation 0.1 90 < th dose independent rect. 2 1
755 414.49 precipitation 0.1 90 < th dose dependent rect. 2 1
757 414.52 wind 9.0 90 < th dose independent rect. 2 1
758 414.52 temperature 10.0 90 > th dose independent rect. 2 1
760 414.52 temperature 30.0 90 < th dose independent rect. 2 1
761 414.52 humidity 50.0 90 > th dose independent rect. 2 1
765 414.52 atmosphere 1010.0 90 < th dose independent rect. 2 1
767 414.52 radiation 1.0 90 < th dose independent rect. 2 1
772 414.52 temperature 10.0 90 > th dose independent rect. 3 23
773 414.52 radiation 1.0 90 < th dose dependent rect. 2 1
795 414.74 humidity 80.0 14400 < th dose dependent rect. 21 4
796 414.75 humidity 80.0 14400 > th dose independent rect. 22 5
897 415.36 humidity 80.0 14400 < th dose dependent rect. 21 10
943 415.75 radiation 30.0 43200 < th dose independent rect. 11 1
958 415.95 wind 1.0 43200 > th dose independent rect. 11 1
981 416.11 wind 1.0 14400 > th dose dependent rect. 24 16