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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0591300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.24 (0.0463) R2 : 0.765
β1 : -0.442 (0.199) R2dD : 0.00424 R2D : -0.0149
β2 : 3.09 (0.114) R2dC : 0.46 R2C : 0.625
β3 : 4.38 (0.357) R2dE : 0.187 R2E : 0.265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.72 (1.15) R2dD*E : 0.0516 R2D*E : -0.118
γ1 : -0.421 (0.0986) R2dN8 : 0.0146 R2N8 : 0.0168
σ : 0.805
deviance : 298.97
__
_____
C
peak time of C : 1.5
E
wheather : radiation
threshold : 0.8313
memory length : 1508
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
298.67 0.812 5.23 -0.404 3.12 4.31 0.309 6.38 -0.417 1.49 0.8323 1506 -- --
313.84 0.825 5.14 0.247 2.85 3.37 0.943 -- -0.306 1.45 1.711 1559 -- --
298.97 0.805 5.24 -0.442 3.09 4.38 -- 6.72 -0.421 1.5 0.8313 1508 -- --
317.59 0.83 5.13 0.0819 3.09 3.09 -- -- -0.323 1.48 1.773 1526 -- --
410.16 0.943 5.11 0.0872 -- 7.06 -- 4.98 -0.204 -- 1.02 1715 -- --
397.74 0.935 5.24 -0.458 3.69 -- 0.905 -- -0.7 1.27 -- -- -- --
401.1 0.938 5.24 -0.49 3.69 -- -- -- -0.705 1.28 -- -- -- --
437.33 0.974 5.07 0.543 -- 6.66 -- -- -0.0913 -- 1.61 1720 -- --
317.61 0.83 5.15 -- 3.12 3.03 -- -- -0.339 1.45 1.74 1526 -- --
1243.28 1.65 5.19 -0.346 -- -- -- -- -0.629 -- -- -- -- --
407.42 0.944 5.23 -- 3.69 -- -- -- -0.65 1.28 -- -- -- --
443.93 0.981 5.08 -- -- 6.48 -- -- -0.154 -- 1.727 1730 -- --
1246.44 1.65 5.18 -- -- -- -- -- -0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.41 radiation 1.0 720 < th dose dependent rect. 5 14
2 303.05 humidity 80.0 1440 > th dose independent rect. 11 1
3 303.70 humidity 80.0 1440 < th dose independent rect. 11 2
6 306.17 radiation 1.0 1440 < th dose dependent rect. 16 22
9 306.34 radiation 1.0 720 < th dose dependent rect. 21 22
29 307.30 radiation 1.0 1440 < th dose dependent rect. 7 23
30 307.31 radiation 1.0 1440 < th dose dependent rect. 4 21
31 307.33 radiation 1.0 1440 < th dose dependent rect. 4 19
32 307.34 radiation 1.0 1440 < th dose dependent rect. 4 17
47 307.49 radiation 1.0 1440 < th dose dependent rect. 24 23
48 307.50 radiation 1.0 1440 < th dose dependent rect. 24 21
53 307.53 radiation 1.0 1440 < th dose dependent no NA NA
84 307.70 radiation 1.0 1440 < th dose dependent rect. 9 23
101 308.44 radiation 1.0 1440 < th dose dependent sin 13 NA
103 308.86 humidity 80.0 43200 < th dose independent rect. 5 2
105 309.14 humidity 70.0 720 > th dose dependent rect. 8 14
113 309.82 humidity 70.0 1440 > th dose dependent rect. 11 1
118 310.07 humidity 80.0 43200 < th dose independent rect. 4 4
129 310.34 radiation 1.0 1440 < th dose dependent sin 0 NA
132 310.44 humidity 80.0 14400 < th dose independent rect. 14 4
135 310.51 temperature 25.0 4320 < th dose independent rect. 17 1
140 310.82 humidity 80.0 14400 > th dose independent rect. 14 4
141 310.85 humidity 80.0 14400 > th dose independent rect. 13 6
148 310.97 temperature 25.0 4320 > th dose independent rect. 17 1
158 311.17 radiation 1.0 720 < th dose dependent rect. 16 3
159 311.20 humidity 80.0 1440 < th dose independent rect. 10 4
168 311.37 humidity 70.0 14400 < th dose independent rect. 18 14
184 311.63 humidity 70.0 14400 > th dose independent rect. 19 13
191 311.83 humidity 80.0 1440 > th dose independent rect. 10 4
203 312.14 radiation 20.0 4320 < th dose independent rect. 7 1
206 312.22 radiation 1.0 1440 < th dose dependent rect. 16 9
209 312.33 radiation 1.0 1440 < th dose dependent rect. 16 7
210 312.34 radiation 1.0 1440 < th dose dependent rect. 16 5
234 312.86 humidity 70.0 14400 < th dose independent rect. 18 3
236 312.86 humidity 80.0 1440 < th dose independent rect. 7 13
260 313.19 humidity 80.0 720 > th dose independent rect. 9 12
281 313.53 radiation 1.0 720 < th dose independent rect. 21 22
286 313.61 humidity 80.0 1440 < th dose independent sin 0 NA
293 313.77 humidity 80.0 43200 > th dose independent rect. 4 3
295 313.78 radiation 1.0 720 > th dose independent rect. 9 22
332 314.21 humidity 70.0 14400 > th dose dependent rect. 14 1
344 314.45 precipitation 0.1 14400 > th dose dependent rect. 5 3
362 314.71 radiation 1.0 720 < th dose independent rect. 5 23
373 314.82 radiation 1.0 14400 > th dose independent rect. 18 1
395 314.92 humidity 80.0 14400 > th dose independent rect. 14 1
401 315.08 humidity 80.0 1440 > th dose independent sin 23 NA
403 315.11 radiation 1.0 720 < th dose independent rect. 5 14
415 315.27 temperature 20.0 14400 > th dose dependent rect. 17 1
417 315.29 temperature 25.0 4320 > th dose independent rect. 10 1
421 315.35 radiation 1.0 720 < th dose independent rect. 23 20
439 315.61 humidity 80.0 14400 > th dose dependent rect. 18 1
449 315.69 humidity 70.0 1440 > th dose dependent sin 23 NA
456 315.73 radiation 20.0 4320 < th dose independent rect. 4 4
457 315.74 radiation 20.0 4320 < th dose independent rect. 18 14
475 315.82 radiation 1.0 14400 < th dose independent rect. 18 3
479 315.83 radiation 1.0 14400 < th dose independent rect. 18 5
480 315.83 radiation 1.0 1440 > th dose independent rect. 16 23
488 315.87 temperature 25.0 4320 < th dose independent rect. 10 1
498 315.92 precipitation 0.1 14400 > th dose independent rect. 5 3
505 315.94 radiation 20.0 4320 < th dose independent rect. 22 10
542 316.17 humidity 70.0 14400 < th dose dependent rect. 16 5
573 316.36 radiation 1.0 1440 < th dose independent rect. 16 23
574 316.39 humidity 70.0 720 > th dose dependent sin 20 NA
585 316.50 precipitation 0.1 14400 < th dose independent rect. 5 3
586 316.50 precipitation 0.1 14400 < th dose dependent rect. 5 3
587 316.50 humidity 80.0 14400 > th dose dependent rect. 13 8
590 316.53 humidity 70.0 14400 > th dose dependent rect. 13 6
604 316.60 radiation 1.0 1440 > th dose independent rect. 13 23
627 316.77 radiation 1.0 1440 > th dose independent rect. 7 23
629 316.81 humidity 70.0 14400 > th dose independent rect. 18 3
642 316.89 radiation 1.0 1440 > th dose independent rect. 5 14
680 317.04 humidity 70.0 14400 > th dose independent rect. 18 11
689 317.08 radiation 1.0 1440 > th dose independent no NA NA
761 317.22 radiation 1.0 720 < th dose independent rect. 7 12
763 317.22 temperature 25.0 4320 > th dose dependent rect. 13 1
769 317.24 humidity 80.0 43200 < th dose dependent rect. 2 6
777 317.28 humidity 80.0 1440 < th dose independent rect. 8 7
797 317.37 radiation 1.0 1440 < th dose independent rect. 13 23
800 317.39 humidity 80.0 43200 > th dose independent rect. 3 1
802 317.39 radiation 1.0 1440 < th dose independent rect. 5 20
804 317.39 temperature 30.0 14400 < th dose dependent rect. 17 1
806 317.40 radiation 1.0 1440 < th dose independent rect. 5 16
807 317.40 radiation 1.0 1440 < th dose independent rect. 5 18
824 317.45 temperature 25.0 4320 > th dose dependent rect. 11 1
825 317.45 humidity 70.0 14400 < th dose dependent rect. 18 1
894 317.66 radiation 1.0 1440 < th dose independent rect. 24 23
913 317.69 radiation 1.0 1440 < th dose independent no NA NA
937 317.74 humidity 90.0 14400 > th dose independent rect. 18 6
964 317.84 humidity 90.0 14400 > th dose independent rect. 17 9
991 317.91 humidity 90.0 14400 > th dose dependent rect. 18 8
993 317.92 radiation 1.0 1440 < th dose independent rect. 7 23
996 317.94 radiation 1.0 720 < th dose independent rect. 7 21