Os03g0590700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF498 family protein.
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Os03g0590700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF498 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.89 | 0.364 | 8.49 | 0.618 | 0.352 | -1.15 | -0.174 | 3.94 | 0.0964 | 13.9 | 26.6 | 257 | -- | -- |
| 61.33 | 0.365 | 8.51 | 0.309 | 0.133 | -0.74 | -0.158 | -- | 0.136 | 12.8 | 18.9 | 559 | -- | -- |
| 59.99 | 0.361 | 8.5 | 0.598 | 0.351 | -1.14 | -- | 3.75 | 0.0912 | 14 | 26.6 | 259 | -- | -- |
| 61.11 | 0.364 | 8.51 | 0.321 | 0.181 | -0.816 | -- | -- | 0.147 | 14.7 | 18.8 | 526 | -- | -- |
| 65.46 | 0.377 | 8.5 | 0.531 | -- | -1.02 | -- | 3.93 | 0.0518 | -- | 27.66 | 365 | -- | -- |
| 72.08 | 0.398 | 8.54 | 0.124 | 0.245 | -- | -0.301 | -- | 0.00223 | 9.3 | -- | -- | -- | -- |
| 72.4 | 0.398 | 8.54 | 0.113 | 0.245 | -- | -- | -- | 0.00214 | 9.44 | -- | -- | -- | -- |
| 62.04 | 0.367 | 8.51 | 0.334 | -- | -0.774 | -- | -- | 0.128 | -- | 18.58 | 708 | -- | -- |
| 63.47 | 0.371 | 8.52 | -- | 0.193 | -0.701 | -- | -- | 0.103 | 14.1 | 19.88 | 472 | -- | -- |
| 75.92 | 0.407 | 8.55 | 0.112 | -- | -- | -- | -- | 0.00293 | -- | -- | -- | -- | -- |
| 72.74 | 0.399 | 8.54 | -- | 0.245 | -- | -- | -- | -0.0105 | 9.41 | -- | -- | -- | -- |
| 64.55 | 0.374 | 8.53 | -- | -- | -0.683 | -- | -- | 0.0911 | -- | 18.9 | 660 | -- | -- |
| 76.25 | 0.408 | 8.55 | -- | -- | -- | -- | -- | -0.00948 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 5 | 53.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 9 | 54.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 36 | 55.38 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 39 | 55.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 40 | 55.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 65 | 56.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 66 | 56.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 96 | 56.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 115 | 56.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 143 | 57.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 151 | 57.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 159 | 57.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 175 | 57.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 206 | 57.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 259 | 57.93 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 284 | 58.07 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 304 | 58.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 402 | 58.72 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 407 | 58.73 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 446 | 58.89 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 546 | 59.27 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 14 |
| 580 | 59.38 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 695 | 59.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 703 | 59.72 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 725 | 59.81 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 18 |
| 798 | 60.05 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 2 |
| 824 | 60.09 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 829 | 60.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 891 | 60.30 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 21 |
| 906 | 60.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 930 | 60.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 948 | 60.41 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 964 | 60.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |