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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0589500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0231) R2 : 0.00384
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0645 (0.0486) R2dN8 : 0.00496 R2N8 : 0.00384
σ : 0.435
deviance : 86.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.73 0.42 3.2 -0.0976 0.171 -0.368 -0.295 1.6 0.0427 6.17 1 16 -- --
81.87 0.421 3.18 -0.0322 0.187 -0.227 -0.44 -- 0.0616 5.96 1.1 16 -- --
79.94 0.416 3.2 -0.103 0.17 -0.368 -- 1.66 0.0425 6.17 1.014 16 -- --
82.31 0.423 3.18 -0.0359 0.185 -0.225 -- -- 0.0625 6.15 1.125 16 -- --
81.24 0.42 3.2 -0.111 -- -0.463 -- 1.76 0.0443 -- 1.002 16 -- --
83.19 0.428 3.18 -0.00422 0.252 -- -0.403 -- 0.0569 5.6 -- -- -- --
83.59 0.428 3.18 -0.0059 0.25 -- -- -- 0.0587 5.67 -- -- -- --
83.85 0.426 3.18 -0.0437 -- -0.313 -- -- 0.0676 -- 1.135 16 -- --
82.34 0.423 3.18 -- 0.19 -0.237 -- -- 0.0651 6.13 1.061 16 -- --
86.83 0.435 3.18 0.00206 -- -- -- -- 0.0647 -- -- -- -- --
83.59 0.428 3.18 -- 0.25 -- -- -- 0.0594 5.67 -- -- -- --
83.9 0.427 3.18 -- -- -0.308 -- -- 0.0722 -- 1.128 16 -- --
86.83 0.435 3.18 -- -- -- -- -- 0.0645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.21 temperature 20.0 30 > th dose dependent rect. 2 1
2 64.36 temperature 20.0 30 > th dose independent rect. 2 1
3 64.36 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 64.40 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 64.55 wind 3.0 30 < th dose dependent rect. 2 1
11 64.61 wind 3.0 30 < th dose independent rect. 2 1
15 64.71 humidity 80.0 30 > th dose independent rect. 2 1
18 64.80 humidity 50.0 30 > th dose dependent rect. 2 1
21 64.81 temperature 10.0 30 > th dose independent rect. 2 1
23 64.81 temperature 30.0 30 < th dose independent rect. 2 1
24 64.81 humidity 50.0 30 > th dose independent rect. 2 1
28 64.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 64.81 radiation 1.0 30 < th dose independent rect. 2 1
35 64.81 precipitation 0.1 30 < th dose independent rect. 2 1
36 64.81 temperature 10.0 30 > th dose independent rect. 3 23
38 64.81 radiation 1.0 30 < th dose dependent rect. 2 1
43 64.81 precipitation 0.1 30 < th dose dependent rect. 2 1
49 65.55 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 65.95 temperature 30.0 30 < th dose dependent rect. 2 1
53 66.36 wind 1.0 30 > th dose independent rect. 2 1
68 67.83 wind 9.0 30 < th dose independent rect. 3 23
69 67.87 radiation 10.0 43200 < th dose dependent rect. 3 1
73 67.92 radiation 10.0 4320 < th dose dependent rect. 3 1
74 67.93 wind 9.0 1440 < th dose independent rect. 3 1
75 67.93 temperature 10.0 1440 > th dose independent rect. 3 1
78 67.93 temperature 30.0 1440 < th dose independent rect. 3 1
82 67.93 humidity 50.0 1440 > th dose independent rect. 3 1
91 67.93 atmosphere 995.0 1440 > th dose independent rect. 3 1
92 67.93 radiation 1.0 1440 < th dose independent rect. 3 1
112 67.93 temperature 10.0 1440 > th dose independent rect. 4 23
160 68.74 temperature 25.0 90 > th dose independent rect. 1 3
162 68.99 temperature 25.0 90 > th dose dependent rect. 1 3
170 70.36 atmosphere 995.0 30 > th dose independent rect. 3 23
174 70.80 precipitation 0.1 30 < th dose independent rect. 3 23
175 70.80 precipitation 0.1 30 < th dose dependent rect. 3 23
196 72.60 atmosphere 1005.0 10 > th dose dependent rect. 2 3
220 74.14 humidity 50.0 30 > th dose independent rect. 3 23
261 75.90 temperature 30.0 30 < th dose independent rect. 3 23
268 76.13 temperature 25.0 1440 < th dose independent rect. 1 1
297 76.25 wind 3.0 30 < th dose dependent rect. 2 3
299 76.36 atmosphere 1005.0 30 > th dose independent rect. 2 3
314 76.69 humidity 90.0 90 < th dose independent rect. 2 1
401 78.15 temperature 25.0 720 < th dose independent rect. 21 5
420 78.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
435 78.53 humidity 90.0 90 < th dose independent rect. 2 3
461 78.71 temperature 25.0 720 < th dose independent rect. 21 8
466 78.74 temperature 20.0 10 > th dose independent rect. 2 3
469 78.75 wind 9.0 1440 < th dose independent rect. 3 3
470 78.75 temperature 10.0 1440 > th dose independent rect. 3 3
473 78.75 temperature 30.0 1440 < th dose independent rect. 3 3
477 78.75 humidity 50.0 1440 > th dose independent rect. 3 3
486 78.75 atmosphere 995.0 1440 > th dose independent rect. 3 3
487 78.75 radiation 20.0 1440 < th dose independent rect. 3 3
496 78.75 temperature 10.0 1440 > th dose independent rect. 6 21
527 78.89 wind 1.0 30 > th dose independent rect. 3 23
546 78.97 wind 1.0 10 < th dose independent rect. 11 16
557 79.02 wind 9.0 30 < th dose independent rect. 5 21
574 79.10 precipitation 0.1 30 < th dose independent rect. 2 3
576 79.10 precipitation 0.1 30 < th dose dependent rect. 2 3
594 79.13 humidity 90.0 10 < th dose independent rect. 4 1
605 79.16 temperature 10.0 30 > th dose independent rect. 2 3
607 79.16 temperature 30.0 30 < th dose independent rect. 2 3
608 79.16 humidity 50.0 30 > th dose independent rect. 2 3
612 79.16 atmosphere 1010.0 30 < th dose independent rect. 2 3
614 79.16 radiation 1.0 30 < th dose independent rect. 2 3
620 79.16 temperature 10.0 30 > th dose independent rect. 5 21
621 79.16 radiation 10.0 30 < th dose dependent rect. 2 3
638 79.20 precipitation 0.1 30 < th dose independent rect. 5 21
639 79.20 precipitation 0.1 30 < th dose dependent rect. 5 21
647 79.23 atmosphere 995.0 30 > th dose independent rect. 5 21
695 79.33 temperature 10.0 30 > th dose dependent rect. 3 23
705 79.38 humidity 50.0 30 > th dose independent rect. 5 21
720 79.42 wind 9.0 720 < th dose dependent rect. 2 1
731 79.47 wind 1.0 10 > th dose independent rect. 5 23
736 79.50 wind 1.0 10 > th dose independent rect. 22 13
748 79.53 radiation 40.0 10 < th dose dependent rect. 14 12
755 79.54 radiation 20.0 10 < th dose dependent rect. 16 10
769 79.60 wind 1.0 10 < th dose independent rect. 8 19
770 79.60 wind 1.0 10 > th dose independent rect. 21 23
776 79.61 radiation 1.0 30 < th dose dependent rect. 2 6
786 79.62 radiation 20.0 10 < th dose dependent rect. 14 12
819 79.70 radiation 1.0 30 < th dose independent rect. 2 6
834 79.72 humidity 50.0 30 > th dose dependent rect. 2 3
836 79.73 precipitation 0.1 720 < th dose independent rect. 7 8
837 79.73 radiation 10.0 10 < th dose independent rect. 16 10
838 79.73 radiation 10.0 10 < th dose independent rect. 14 12
841 79.73 precipitation 0.1 720 < th dose dependent rect. 7 8
844 79.74 atmosphere 1000.0 10 > th dose independent rect. 16 10
847 79.74 radiation 10.0 10 < th dose dependent rect. 11 15
873 79.78 wind 1.0 30 > th dose independent rect. 4 1
883 79.78 temperature 30.0 30 < th dose independent rect. 5 21
894 79.80 radiation 20.0 43200 < th dose dependent rect. 21 1
897 79.81 atmosphere 995.0 720 > th dose independent rect. 15 16
906 79.83 wind 3.0 30 > th dose independent rect. 20 1
907 79.83 temperature 25.0 10 > th dose independent rect. 20 1
910 79.83 humidity 50.0 10 > th dose independent rect. 16 10
911 79.83 temperature 25.0 30 > th dose dependent rect. 20 1
921 79.84 radiation 10.0 4320 < th dose dependent rect. 21 1
936 79.85 radiation 10.0 10 < th dose dependent rect. 6 20
940 79.86 precipitation 0.1 10 < th dose independent rect. 2 14
945 79.86 precipitation 0.1 10 < th dose dependent rect. 2 14
957 79.87 temperature 10.0 30 > th dose dependent rect. 5 21
975 79.89 wind 9.0 30 < th dose dependent rect. 3 23
987 79.91 wind 9.0 10 < th dose independent rect. 16 10
989 79.91 radiation 30.0 10 < th dose independent rect. 16 10