Os03g0588100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0588100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.33 | 0.536 | 10.2 | 1.64 | 2.09 | 92 | -0.843 | 202 | -0.0746 | 7.05 | 15 | 1426 | -- | -- |
| 138.37 | 0.552 | 9.14 | -0.35 | 2.09 | -3.5 | -0.89 | -- | -0.0346 | 6.97 | 15 | 1426 | -- | -- |
| 132.17 | 0.535 | 10.2 | 1.6 | 2.08 | 91.6 | -- | 201 | -0.0759 | 7.06 | 15 | 1423 | -- | -- |
| 133.63 | 0.538 | 9.15 | -0.557 | 2.07 | -3.33 | -- | -- | -0.0797 | 7.06 | 15.37 | 1429 | -- | -- |
| 359.81 | 0.883 | 10.1 | 1.47 | -- | 91.9 | -- | 203 | -0.0262 | -- | 14.9 | 1405 | -- | -- |
| 161.93 | 0.597 | 9.13 | -0.211 | 2.11 | -- | -1.06 | -- | 0.000532 | 7.1 | -- | -- | -- | -- |
| 164.91 | 0.601 | 9.13 | -0.232 | 2.11 | -- | -- | -- | 0.00292 | 7.1 | -- | -- | -- | -- |
| 358.51 | 0.882 | 9.19 | -0.561 | -- | -3.94 | -- | -- | -0.0531 | -- | 15.09 | 1400 | -- | -- |
| 141.26 | 0.554 | 9.13 | -- | 2.06 | -3.06 | -- | -- | -0.0111 | 7.08 | 15 | 1367 | -- | -- |
| 398.61 | 0.933 | 9.17 | -0.192 | -- | -- | -- | -- | 0.0406 | -- | -- | -- | -- | -- |
| 166.34 | 0.603 | 9.12 | -- | 2.1 | -- | -- | -- | 0.0288 | 7.1 | -- | -- | -- | -- |
| 366.02 | 0.891 | 9.18 | -- | -- | -3.6 | -- | -- | 0.0151 | -- | 14.96 | 1374 | -- | -- |
| 399.58 | 0.933 | 9.17 | -- | -- | -- | -- | -- | 0.0619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.56 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 2 | 121.56 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 3 | 125.28 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 5 | 125.53 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 14 |
| 7 | 125.88 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 19 |
| 8 | 126.26 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 20 |
| 11 | 126.89 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 12 | 127.01 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 16 | 127.44 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 20 | 127.65 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 22 | 127.65 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 32 | 127.96 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 43 | 128.40 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 51 | 128.83 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 56 | 128.95 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 6 |
| 72 | 129.23 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 86 | 129.57 | temperature | 20.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 91 | 129.72 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 12 |
| 97 | 129.80 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 99 | 129.86 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 21 |
| 105 | 130.03 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 116 | 130.12 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 117 | 130.14 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 126 | 130.21 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 128 | 130.22 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 132 | 130.22 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 133 | 130.22 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 137 | 130.24 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 138 | 130.24 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 141 | 130.25 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 159 | 130.30 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 166 | 130.33 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 172 | 130.34 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 175 | 130.34 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 178 | 130.34 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 180 | 130.34 | temperature | 15.0 | 1440 | < th | dose dependent | no | NA | NA |
| 181 | 130.34 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 183 | 130.34 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 194 | 130.34 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 208 | 130.35 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 209 | 130.35 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 218 | 130.35 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 225 | 130.37 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 228 | 130.37 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 234 | 130.37 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 1 | 21 |
| 235 | 130.37 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 243 | 130.38 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 244 | 130.39 | temperature | 15.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 245 | 130.39 | temperature | 15.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 290 | 130.45 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 410 | 130.67 | temperature | 15.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 416 | 130.68 | temperature | 15.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 425 | 130.70 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 440 | 130.73 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 3 |
| 445 | 130.73 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 450 | 130.74 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 469 | 130.80 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 496 | 130.88 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 569 | 130.92 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 623 | 130.98 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 703 | 131.07 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 805 | 131.21 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 813 | 131.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 815 | 131.23 | temperature | 15.0 | 1440 | < th | dose independent | no | NA | NA |
| 819 | 131.23 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 829 | 131.24 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 843 | 131.27 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 845 | 131.27 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 9 |
| 852 | 131.29 | temperature | 15.0 | 1440 | > th | dose independent | no | NA | NA |
| 889 | 131.36 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 992 | 131.57 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 4 |