Os03g0586800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS).
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Os03g0586800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.48 | 0.408 | 11.5 | 0.00427 | 1.26 | 0.741 | 0.864 | -1.82 | -0.264 | 17.6 | 25.49 | 72 | -- | -- |
| 76.29 | 0.41 | 11.5 | 0.209 | 1.3 | 0.627 | 0.681 | -- | -0.211 | 17.6 | 25.61 | 62 | -- | -- |
| 77.04 | 0.409 | 11.5 | 0.0696 | 1.27 | 0.742 | -- | -1.21 | -0.236 | 17.6 | 25.7 | 62 | -- | -- |
| 77.37 | 0.412 | 11.5 | 0.201 | 1.3 | 0.659 | -- | -- | -0.208 | 17.6 | 25.7 | 63 | -- | -- |
| 128.97 | 0.529 | 11.5 | -0.154 | -- | 1.68 | -- | -1.18 | -0.386 | -- | 24.36 | 220 | -- | -- |
| 82.1 | 0.425 | 11.5 | 0.297 | 1.48 | -- | 0.848 | -- | -0.178 | 17.3 | -- | -- | -- | -- |
| 83.89 | 0.429 | 11.5 | 0.296 | 1.48 | -- | -- | -- | -0.174 | 17.2 | -- | -- | -- | -- |
| 131.06 | 0.533 | 11.5 | -0.00215 | -- | 1.56 | -- | -- | -0.354 | -- | 24.4 | 220 | -- | -- |
| 78.4 | 0.415 | 11.5 | -- | 1.28 | 0.708 | -- | -- | -0.232 | 17.7 | 25.7 | 63 | -- | -- |
| 198.82 | 0.659 | 11.4 | 0.245 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 86.21 | 0.434 | 11.5 | -- | 1.48 | -- | -- | -- | -0.207 | 17.2 | -- | -- | -- | -- |
| 131.06 | 0.533 | 11.5 | -- | -- | 1.56 | -- | -- | -0.354 | -- | 24.4 | 220 | -- | -- |
| 200.4 | 0.661 | 11.4 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.02 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 6 | 68.78 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 29 | 69.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 33 | 69.70 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 46 | 70.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 57 | 70.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 58 | 70.15 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 160 | 71.31 | temperature | 15.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 253 | 71.89 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 289 | 72.10 | temperature | 25.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 293 | 72.12 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 298 | 72.13 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 329 | 72.25 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 360 | 72.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 376 | 72.47 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 400 | 72.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 410 | 72.57 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 422 | 72.61 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 442 | 72.67 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 449 | 72.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 451 | 72.69 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 479 | 72.77 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 480 | 72.77 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 497 | 72.82 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 505 | 72.84 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 543 | 72.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 24 | 11 |
| 560 | 73.05 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 566 | 73.06 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 606 | 73.16 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 641 | 73.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 666 | 73.32 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 676 | 73.34 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 685 | 73.36 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 694 | 73.38 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 727 | 73.45 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 753 | 73.50 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 792 | 73.56 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 828 | 73.62 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 886 | 73.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 891 | 73.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 911 | 73.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 916 | 73.79 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 918 | 73.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 923 | 73.80 | temperature | 20.0 | 720 | > th | dose independent | rect. | 24 | 3 |
| 944 | 73.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 978 | 73.88 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 994 | 73.92 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 9 |