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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0584400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0494) R2 : 0.364
β1 : 2.13 (0.181) R2dD : 0.2 R2D : 0.0425
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.38 (0.105) R2dN8 : 0.321 R2N8 : 0.164
σ : 0.927
deviance : 393.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.93 0.876 4.45 2.22 0.483 -0.484 1.9 -2.23 1.28 23.7 57 1356 -- --
354.1 0.876 4.42 2.34 0.516 -0.727 1.77 -- 1.27 23.4 55 1243 -- --
361.45 0.885 4.46 2.24 0.509 -0.424 -- -2.23 1.29 22.6 57 1521 -- --
366.96 0.892 4.43 2.27 0.525 -0.747 -- -- 1.27 22.5 54.92 1237 -- --
375.52 0.903 4.44 2.15 -- -0.365 -- -2.14 1.29 -- 56.99 1550 -- --
370.28 0.902 4.39 2.18 0.435 -- 1.66 -- 1.38 23.3 -- -- -- --
380.76 0.914 4.4 2.12 0.461 -- -- -- 1.38 22 -- -- -- --
382.42 0.911 4.41 2.25 -- -0.579 -- -- 1.27 -- 56 1339 -- --
473.98 1.01 4.39 -- 0.666 -1.31 -- -- 1.38 21.8 88 1992 -- --
393.57 0.927 4.39 2.13 -- -- -- -- 1.38 -- -- -- -- --
499.19 1.05 4.45 -- 0.471 -- -- -- 1.15 22.3 -- -- -- --
480.79 1.02 4.3 -- -- -1.26 -- -- 1.55 -- 88 7176 -- --
512.72 1.06 4.44 -- -- -- -- -- 1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.86 radiation 30.0 43200 > th dose independent rect. 15 1
17 337.03 humidity 50.0 43200 > th dose independent rect. 14 1
18 337.98 humidity 80.0 43200 < th dose independent rect. 18 2
20 338.47 humidity 80.0 43200 > th dose independent rect. 18 2
22 340.04 humidity 50.0 43200 > th dose independent rect. 13 4
23 340.26 humidity 60.0 43200 < th dose dependent rect. 14 1
24 340.47 humidity 70.0 43200 > th dose dependent rect. 18 1
26 340.74 radiation 10.0 43200 > th dose independent rect. 15 1
42 341.45 humidity 50.0 43200 < th dose independent rect. 14 1
44 341.71 precipitation 0.1 43200 < th dose independent rect. 17 1
45 341.71 precipitation 0.1 43200 < th dose dependent rect. 17 1
46 341.79 precipitation 0.1 43200 > th dose independent rect. 17 1
66 342.73 humidity 70.0 14400 > th dose dependent rect. 1 1
69 342.79 temperature 25.0 720 > th dose independent rect. 21 1
73 343.04 temperature 25.0 43200 > th dose dependent rect. 4 1
74 343.07 humidity 60.0 43200 > th dose independent rect. 9 1
77 343.13 humidity 60.0 43200 < th dose independent rect. 9 1
81 343.27 temperature 30.0 43200 > th dose dependent rect. 18 1
95 343.32 wind 7.0 43200 > th dose independent rect. 18 1
99 343.43 humidity 50.0 43200 < th dose independent rect. 13 4
101 343.43 humidity 60.0 43200 < th dose dependent rect. 11 4
102 343.46 precipitation 0.1 43200 > th dose dependent rect. 17 1
110 343.74 radiation 40.0 43200 > th dose independent rect. 14 18
143 343.93 humidity 80.0 43200 > th dose dependent rect. 20 1
154 344.05 humidity 60.0 14400 > th dose independent rect. 18 17
158 344.19 wind 7.0 43200 < th dose independent rect. 18 2
191 344.35 humidity 70.0 43200 > th dose dependent rect. 17 3
198 344.41 humidity 80.0 43200 < th dose independent rect. 16 5
202 344.43 temperature 25.0 43200 > th dose independent rect. 4 1
207 344.47 temperature 30.0 43200 > th dose dependent rect. 8 1
230 344.60 humidity 60.0 14400 < th dose dependent rect. 17 18
238 344.67 temperature 25.0 43200 < th dose independent rect. 4 1
242 344.76 humidity 50.0 43200 > th dose independent sin 21 NA
246 344.79 humidity 50.0 43200 > th dose independent rect. 2 15
247 344.79 humidity 50.0 43200 > th dose independent rect. 23 18
269 344.94 temperature 30.0 43200 > th dose independent rect. 18 15
276 345.01 humidity 80.0 43200 > th dose dependent rect. 6 3
300 345.21 humidity 60.0 14400 < th dose independent rect. 18 17
315 345.27 temperature 30.0 43200 < th dose independent rect. 18 15
345 345.47 temperature 30.0 43200 > th dose independent rect. 8 1
364 345.52 wind 9.0 43200 > th dose dependent rect. 13 1
371 345.57 temperature 30.0 43200 < th dose independent rect. 18 7
373 345.60 radiation 10.0 43200 > th dose independent sin 16 NA
374 345.60 temperature 30.0 43200 > th dose independent rect. 18 1
393 345.62 humidity 60.0 14400 < th dose dependent rect. 16 20
414 345.68 humidity 60.0 4320 > th dose independent rect. 15 1
439 345.82 humidity 90.0 43200 < th dose independent rect. 6 1
453 345.91 temperature 30.0 43200 < th dose independent rect. 8 1
480 345.98 humidity 50.0 14400 < th dose independent sin 10 NA
506 346.05 precipitation 0.1 43200 < th dose independent rect. 3 1
510 346.05 precipitation 0.1 43200 < th dose dependent rect. 3 1
513 346.06 atmosphere 1000.0 14400 > th dose dependent rect. 6 1
523 346.12 humidity 90.0 43200 < th dose independent rect. 4 4
548 346.18 atmosphere 1005.0 14400 > th dose independent rect. 15 1
553 346.19 humidity 60.0 14400 < th dose dependent sin 10 NA
604 346.35 precipitation 0.1 43200 > th dose independent rect. 3 1
609 346.36 humidity 50.0 43200 > th dose independent no NA NA
621 346.36 precipitation 0.1 43200 > th dose dependent rect. 3 1
625 346.37 radiation 10.0 43200 > th dose independent rect. 12 6
642 346.37 wind 1.0 43200 < th dose dependent rect. 12 1
646 346.39 radiation 1.0 43200 > th dose independent rect. 4 2
683 346.43 radiation 1.0 43200 < th dose independent rect. 21 9
690 346.44 radiation 1.0 43200 < th dose independent rect. 4 2
693 346.45 radiation 1.0 43200 < th dose independent rect. 2 4
694 346.45 radiation 1.0 43200 < th dose independent rect. 24 6
704 346.47 atmosphere 1000.0 14400 > th dose dependent rect. 24 8
718 346.51 wind 1.0 4320 > th dose independent rect. 9 2
737 346.53 humidity 50.0 43200 < th dose independent sin 21 NA
786 346.62 atmosphere 1000.0 14400 > th dose dependent rect. 24 1
791 346.63 humidity 50.0 14400 > th dose independent rect. 15 21
813 346.67 humidity 80.0 43200 > th dose independent rect. 9 1
863 346.73 humidity 50.0 14400 > th dose independent sin 10 NA
874 346.74 atmosphere 1000.0 14400 > th dose dependent sin 6 NA
934 346.83 atmosphere 1015.0 14400 < th dose dependent rect. 6 1
959 346.87 humidity 50.0 14400 < th dose independent rect. 15 21