Os03g0583000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os03g0583000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.46 | 0.347 | 5.93 | 0.459 | 0.858 | -0.784 | 0.373 | -1.18 | 1.49 | 5.79 | 68 | 5409 | -- | -- |
| 56.35 | 0.35 | 5.93 | 0.495 | 0.852 | -0.869 | 0.415 | -- | 1.5 | 5.77 | 68.24 | 5396 | -- | -- |
| 54.79 | 0.345 | 5.93 | 0.463 | 0.857 | -0.784 | -- | -1.2 | 1.49 | 5.78 | 68.04 | 5391 | -- | -- |
| 56.7 | 0.351 | 5.94 | 0.49 | 0.846 | -0.835 | -- | -- | 1.44 | 5.78 | 67 | 5396 | -- | -- |
| 86.06 | 0.432 | 5.93 | 0.434 | -- | -0.869 | -- | -0.945 | 1.58 | -- | 69 | 6371 | -- | -- |
| 66.93 | 0.384 | 5.94 | 0.523 | 0.861 | -- | 0.363 | -- | 1.46 | 6.14 | -- | -- | -- | -- |
| 67.25 | 0.384 | 5.94 | 0.527 | 0.862 | -- | -- | -- | 1.45 | 6.12 | -- | -- | -- | -- |
| 85.16 | 0.43 | 5.9 | 0.538 | -- | -1.2 | -- | -- | 1.71 | -- | 73 | 4933 | -- | -- |
| 62 | 0.367 | 5.95 | -- | 0.88 | -0.905 | -- | -- | 1.41 | 5.98 | 66.01 | 7233 | -- | -- |
| 105.81 | 0.481 | 5.96 | 0.551 | -- | -- | -- | -- | 1.47 | -- | -- | -- | -- | -- |
| 74.58 | 0.404 | 5.95 | -- | 0.87 | -- | -- | -- | 1.4 | 6.09 | -- | -- | -- | -- |
| 91.69 | 0.446 | 5.89 | -- | -- | -1.23 | -- | -- | 1.79 | -- | 75 | 4888 | -- | -- |
| 113.83 | 0.498 | 5.97 | -- | -- | -- | -- | -- | 1.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.27 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 54.33 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 3 | 54.40 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 6 | 54.69 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 10 | 54.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 11 | 54.89 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 18 | 55.06 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 29 | 55.27 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 36 | 55.37 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 61 | 55.62 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 69 | 55.68 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 71 | 55.68 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 73 | 55.69 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 81 | 55.72 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 82 | 55.72 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 112 | 55.89 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 114 | 55.90 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 139 | 55.98 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 143 | 56.00 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 147 | 56.02 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 155 | 56.03 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 15 | 21 |
| 159 | 56.05 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 20 |
| 161 | 56.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 196 | 56.11 | humidity | 70.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 209 | 56.14 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 9 | 8 |
| 221 | 56.16 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 248 | 56.18 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 9 | 22 |
| 256 | 56.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 262 | 56.21 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 269 | 56.21 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 295 | 56.24 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 297 | 56.24 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 16 |
| 316 | 56.27 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 327 | 56.28 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 328 | 56.28 | humidity | 80.0 | 4320 | < th | dose dependent | no | NA | NA |
| 336 | 56.29 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 343 | 56.29 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 344 | 56.29 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 6 | 23 |
| 389 | 56.33 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 390 | 56.33 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 400 | 56.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 451 | 56.37 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 13 | 6 |
| 455 | 56.37 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 516 | 56.41 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 517 | 56.41 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 519 | 56.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 520 | 56.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 531 | 56.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 537 | 56.42 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 538 | 56.42 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 573 | 56.43 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 17 | NA |
| 588 | 56.44 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 633 | 56.48 | humidity | 70.0 | 4320 | > th | dose independent | sin | 6 | NA |
| 655 | 56.50 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 8 | 12 |
| 699 | 56.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 724 | 56.53 | humidity | 60.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 726 | 56.53 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 738 | 56.54 | humidity | 70.0 | 4320 | < th | dose independent | no | NA | NA |
| 819 | 56.55 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 873 | 56.57 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 877 | 56.57 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 882 | 56.58 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 915 | 56.61 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 919 | 56.61 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 922 | 56.62 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 989 | 56.64 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 5 | 7 |