Os03g0582900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0582900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.24 | 0.54 | 9.35 | -1.58 | 1.36 | 0.873 | -0.31 | -0.304 | -3.34 | 3.68 | 16.18 | 115 | -- | -- |
| 132.26 | 0.536 | 9.36 | -1.56 | 1.29 | 0.929 | -0.409 | -- | -3.34 | 3.69 | 14.56 | 135 | -- | -- |
| 132.05 | 0.535 | 9.36 | -1.59 | 1.31 | 0.9 | -- | -0.472 | -3.35 | 3.7 | 14.13 | 132 | -- | -- |
| 133.03 | 0.537 | 9.36 | -1.57 | 1.26 | 0.918 | -- | -- | -3.34 | 3.64 | 13.83 | 148 | -- | -- |
| 143.86 | 0.559 | 9.35 | -1.53 | -- | 1.79 | -- | -0.647 | -3.33 | -- | 4.923 | 309 | -- | -- |
| 143.84 | 0.562 | 9.38 | -1.62 | 2.12 | -- | -0.324 | -- | -3.39 | 2.57 | -- | -- | -- | -- |
| 144.21 | 0.562 | 9.38 | -1.62 | 2.12 | -- | -- | -- | -3.39 | 2.57 | -- | -- | -- | -- |
| 144.89 | 0.561 | 9.36 | -1.51 | -- | 1.8 | -- | -- | -3.31 | -- | 4.54 | 318 | -- | -- |
| 197.68 | 0.655 | 9.31 | -- | 1.13 | 1.05 | -- | -- | -3.16 | 3.86 | 15.71 | 147 | -- | -- |
| 408.32 | 0.944 | 9.36 | -1.53 | -- | -- | -- | -- | -3.34 | -- | -- | -- | -- | -- |
| 213.03 | 0.683 | 9.34 | -- | 2.09 | -- | -- | -- | -3.21 | 2.56 | -- | -- | -- | -- |
| 204.06 | 0.665 | 9.32 | -- | -- | 1.81 | -- | -- | -3.13 | -- | 3.163 | 332 | -- | -- |
| 469.73 | 1.01 | 9.33 | -- | -- | -- | -- | -- | -3.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.73 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 13 |
| 4 | 129.06 | radiation | 10 | 270 | > th | dose independent | rect. | 11 | 22 |
| 6 | 129.18 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 12 |
| 11 | 129.29 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 19 |
| 12 | 129.32 | humidity | 80 | 270 | < th | dose independent | rect. | 1 | 16 |
| 15 | 129.40 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 19 |
| 26 | 129.51 | humidity | 80 | 10 | < th | dose independent | rect. | 4 | 14 |
| 28 | 129.52 | radiation | 1 | 90 | > th | dose independent | sin | 19 | NA |
| 35 | 129.59 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 23 |
| 83 | 130.72 | radiation | 10 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 87 | 130.79 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 93 | 130.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 99 | 130.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 105 | 131.05 | radiation | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 116 | 131.09 | radiation | 40 | 90 | < th | dose dependent | sin | 13 | NA |
| 117 | 131.10 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 13 |
| 118 | 131.10 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 17 |
| 119 | 131.12 | radiation | 1 | 90 | > th | dose dependent | sin | 13 | NA |
| 133 | 131.46 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 134 | 131.47 | radiation | 1 | 90 | < th | dose independent | sin | 20 | NA |
| 145 | 131.54 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 21 |
| 148 | 131.56 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 5 |
| 150 | 131.57 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 14 |
| 162 | 131.62 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 169 | 131.67 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 180 | 131.77 | radiation | 1 | 90 | < th | dose dependent | sin | 21 | NA |
| 188 | 131.82 | radiation | 10 | 90 | < th | dose dependent | sin | 19 | NA |
| 190 | 131.82 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 195 | 131.85 | radiation | 20 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 207 | 131.94 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 219 | 131.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 229 | 132.02 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 239 | 132.07 | humidity | 80 | 270 | > th | dose independent | sin | 1 | NA |
| 267 | 132.15 | humidity | 70 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 277 | 132.21 | humidity | 80 | 270 | < th | dose independent | sin | 1 | NA |
| 281 | 132.21 | humidity | 90 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 315 | 132.29 | humidity | 80 | 270 | < th | dose independent | rect. | 12 | 3 |
| 325 | 132.31 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 9 |
| 327 | 132.31 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 328 | 132.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 334 | 132.34 | radiation | 1 | 90 | < th | dose independent | rect. | 6 | 17 |
| 342 | 132.36 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 359 | 132.41 | radiation | 10 | 90 | > th | dose independent | sin | 13 | NA |
| 380 | 132.48 | humidity | 80 | 10 | > th | dose independent | sin | 23 | NA |
| 389 | 132.51 | radiation | 1 | 30 | < th | dose independent | sin | 16 | NA |
| 391 | 132.51 | radiation | 1 | 30 | > th | dose independent | rect. | 14 | 5 |
| 438 | 132.62 | radiation | 20 | 270 | > th | dose independent | rect. | 12 | 3 |
| 441 | 132.62 | humidity | 90 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 466 | 132.66 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 487 | 132.72 | humidity | 80 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 493 | 132.74 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 514 | 132.79 | radiation | 1 | 90 | > th | dose independent | rect. | 12 | 6 |
| 526 | 132.79 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 23 |
| 583 | 132.89 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 589 | 132.90 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 594 | 132.91 | radiation | 20 | 90 | < th | dose independent | sin | 13 | NA |
| 610 | 132.93 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 615 | 132.94 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 642 | 132.96 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 6 |
| 683 | 133.02 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 18 |
| 694 | 133.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 13 |
| 697 | 133.05 | humidity | 80 | 10 | < th | dose independent | sin | 22 | NA |
| 736 | 133.11 | radiation | 40 | 270 | > th | dose independent | sin | 13 | NA |
| 739 | 133.11 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 21 |
| 743 | 133.12 | humidity | 70 | 270 | > th | dose independent | rect. | 24 | 21 |
| 752 | 133.14 | humidity | 50 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 755 | 133.15 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 13 |
| 782 | 133.19 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 835 | 133.31 | radiation | 10 | 90 | < th | dose dependent | rect. | 12 | 11 |
| 856 | 133.35 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 858 | 133.36 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 21 |
| 878 | 133.39 | wind | 3 | 270 | > th | dose independent | rect. | 12 | 3 |
| 884 | 133.39 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 23 |
| 889 | 133.40 | wind | 3 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 923 | 133.45 | humidity | 80 | 720 | > th | dose independent | sin | 5 | NA |
| 945 | 133.47 | radiation | 10 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 971 | 133.50 | wind | 5 | 30 | > th | dose independent | rect. | 12 | 7 |