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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0582800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.0433) R2 : 0.597
β1 : -2.38 (0.163) R2dD : 0.217 R2D : 0.124
β2 : 3.52 (0.158) R2dC : 0.927 R2C : 0.0806
β3 : 3.32 (0.237) R2dE : 0.375 R2E : -0.522
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0588 (0.096) R2dN8 : 0.000506 R2N8 : -0.00821
σ : 0.805
deviance : 298.81
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_____
C
peak time of C : 3.85
E
wheather : temperature
threshold : 4.442
memory length : 292
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.617
open length of G : 21.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.93 0.806 5.53 -2.67 3.52 3.37 0.335 -1.89 -0.132 3.89 6.075 288 0.7 21.5
295.43 0.801 5.51 -2.42 3.59 3.39 1.1 -- -0.0631 3.84 4.896 295 0.568 21.5
293.77 0.798 5.55 -2.73 3.53 3.43 -- -2.13 -0.158 3.86 5.349 285 0.627 21.6
298.81 0.805 5.5 -2.38 3.52 3.32 -- -- -0.0588 3.85 4.442 292 0.617 21.5
523.36 1.07 5.52 -2.47 -- 2.54 -- 2.01 -0.113 -- -35.11 5556 2.24 23.6
418.53 0.959 5.42 -1.85 1.99 -- 0.73 -- 0.324 4.47 -- -- -- --
419.96 0.96 5.42 -1.85 1.99 -- -- -- 0.32 4.45 -- -- -- --
480.55 1.02 5.56 -2.71 -- 2.98 -- -- -0.147 -- -0.8735 1254 0.65 23.4
447.32 0.985 5.43 -- 3.54 3.07 -- -- 0.224 3.79 1.591 275 0.867 21.5
631.92 1.17 5.44 -1.78 -- -- -- -- 0.372 -- -- -- -- --
510.63 1.06 5.38 -- 1.95 -- -- -- 0.526 4.48 -- -- -- --
646.09 1.18 5.45 -- -- 1.94 -- -- 0.308 -- -0.9961 1223 3.03 23.2
715.2 1.25 5.39 -- -- -- -- -- 0.569 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 298.97 temperature 10 270 > th dose dependent rect. 1 21
2 303.14 temperature 20 270 > th dose independent rect. 2 18
3 303.36 temperature 10 720 > th dose dependent rect. 17 22
4 303.83 temperature 10 270 > th dose dependent rect. 2 19
7 304.71 temperature 20 270 > th dose independent rect. 3 16
26 307.88 temperature 10 720 > th dose dependent rect. 17 15
33 308.98 temperature 30 720 < th dose dependent rect. 15 19
45 309.94 temperature 20 1440 > th dose dependent rect. 18 3
61 310.84 temperature 10 1440 > th dose dependent rect. 18 1
76 311.45 temperature 10 1440 > th dose dependent rect. 18 3
77 311.45 temperature 10 1440 > th dose dependent rect. 17 6
89 311.61 temperature 10 720 > th dose dependent rect. 10 20
136 312.75 temperature 10 1440 > th dose dependent rect. 3 20
161 313.05 temperature 30 1440 < th dose dependent rect. 18 4
188 313.35 temperature 15 1440 > th dose dependent rect. 13 20
270 313.66 temperature 15 1440 > th dose dependent no NA NA
293 313.71 temperature 30 720 < th dose dependent rect. 22 23
323 313.87 temperature 15 1440 > th dose dependent sin 16 NA
341 313.92 temperature 15 1440 > th dose dependent rect. 21 23
424 314.18 temperature 30 270 < th dose dependent rect. 6 21
426 314.19 temperature 10 1440 > th dose dependent rect. 6 2
429 314.20 temperature 30 720 < th dose dependent rect. 4 23
503 314.59 temperature 30 720 < th dose dependent no NA NA
511 314.61 temperature 10 1440 > th dose dependent rect. 5 4
640 315.02 temperature 30 1440 < th dose dependent rect. 6 2
789 315.48 temperature 30 1440 < th dose dependent rect. 5 4
818 315.57 temperature 10 1440 > th dose dependent sin 4 NA
827 315.59 temperature 10 1440 > th dose dependent rect. 3 11