Os03g0582100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0582100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.88	(0.0354)	R²	:	0.718
β₁	:	1.75	(0.191)	R²_dD	:	0.171	R²_D	:	-0.113
β₂	:	2.41	(0.0757)	R²_dC	:	0.635	R²_C	:	0.622
β₃	:	-0.21	(0.108)	R²_dE	:	0.00308	R²_E	:	0.00441
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	5.25	(0.544)	R²_dD*E	:	0.178	R²_D*E	:	-0.071
γ₁	:	0.0373	(0.0793)	R²_dN8	:	0.00022	R²_N8	:	-0.00964
σ	:	0.548
deviance	:	138.6
__

_____

C
peak time of C	:	16.4
E
wheather	:	temperature
threshold	:	18.7
memory length	:	1400
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
137.96	0.552	5.88	1.74	2.42	-0.216	-0.688	5.34	0.032	16.4	18.79	1758	--	--
159.96	0.589	6.01	0.692	2.39	-0.561	-0.599	--	-0.144	16.4	9.525	15208	--	--
138.6	0.548	5.88	1.75	2.41	-0.21	--	5.25	0.0373	16.4	18.7	1400	--	--
160.94	0.591	6.01	0.681	2.39	-0.55	--	--	-0.151	16.4	9.506	15215	--	--
374.96	0.907	6.07	0.179	--	1.95	--	2.47	-0.65	--	18.7	1400	--	--
164.61	0.601	6.06	0.275	2.4	--	-0.573	--	-0.374	16.4	--	--	--	--
165.5	0.602	6.06	0.27	2.39	--	--	--	-0.377	16.4	--	--	--	--
346.89	0.871	6.1	-0.155	--	2.23	--	--	-0.69	--	24.02	1244	--	--
166.21	0.604	6.08	--	2.31	0.34	--	--	-0.448	16.5	9.506	15215	--	--
472.89	1.02	6.05	0.176	--	--	--	--	-0.441	--	--	--	--	--
167.43	0.605	6.07	--	2.39	--	--	--	-0.408	16.4	--	--	--	--
347.51	0.871	6.1	--	--	2.21	--	--	-0.67	--	24.02	1244	--	--
473.71	1.02	6.05	--	--	--	--	--	-0.46	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	134.23	temperature	15	4320	> th	dose dependent	rect.	21	1
3	134.41	temperature	20	4320	> th	dose independent	rect.	20	4
7	134.90	temperature	30	4320	< th	dose dependent	rect.	21	1
15	135.30	temperature	20	4320	< th	dose independent	rect.	20	4
160	137.41	temperature	15	4320	> th	dose dependent	rect.	23	1
223	137.75	temperature	20	1440	> th	dose dependent	sin	14	NA
256	137.94	temperature	30	4320	< th	dose dependent	rect.	23	1
280	138.02	temperature	20	1440	> th	dose dependent	rect.	15	17
542	138.77	temperature	30	4320	< th	dose dependent	sin	14	NA
555	138.81	temperature	20	4320	> th	dose independent	sin	15	NA
602	138.92	atmosphere	1005	14400	< th	dose independent	rect.	11	13
643	138.99	atmosphere	1005	14400	< th	dose independent	rect.	9	14
655	139.01	atmosphere	1005	14400	> th	dose independent	rect.	11	3
657	139.01	temperature	20	1440	> th	dose dependent	no	NA	NA
661	139.02	atmosphere	1005	14400	< th	dose independent	rect.	11	3
680	139.05	temperature	20	1440	> th	dose dependent	rect.	5	23
702	139.10	temperature	20	4320	< th	dose independent	sin	15	NA
731	139.13	atmosphere	1005	14400	< th	dose independent	rect.	9	8
773	139.19	temperature	20	1440	> th	dose dependent	rect.	23	23
774	139.20	atmosphere	1005	14400	< th	dose independent	rect.	13	1
813	139.24	atmosphere	1005	14400	> th	dose independent	rect.	9	8
925	139.40	atmosphere	1005	14400	< th	dose independent	sin	20	NA
937	139.41	atmosphere	1005	14400	> th	dose independent	rect.	8	12
963	139.45	atmosphere	1005	14400	< th	dose independent	rect.	16	8