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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0581200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0282) R2 : 0.155
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.17 (0.136) R2dE : 0.159 R2E : 0.155
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0191 (0.0628) R2dN8 : 0.000258 R2N8 : -0.00403
σ : 0.52
deviance : 124.56
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1012
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.63 0.51 3.53 -0.435 0.176 1.29 -0.2 -0.957 0.00738 8.15 1011 22 -- --
118.37 0.507 3.53 -0.413 0.17 1.29 -0.148 -- -0.0156 8.05 1013 19 -- --
117.74 0.505 3.53 -0.447 0.176 1.3 -- -0.937 0.00282 8.3 1011 19 -- --
118.43 0.507 3.53 -0.418 0.17 1.26 -- -- -0.0163 8.46 1012 19 -- --
119.42 0.509 3.54 -0.438 -- 1.28 -- -0.849 -0.00493 -- 1012 18 -- --
140.82 0.556 3.58 -0.341 0.118 -- -0.0652 -- -0.222 9.23 -- -- -- --
140.83 0.556 3.58 -0.343 0.118 -- -- -- -0.222 9.57 -- -- -- --
120.03 0.51 3.54 -0.417 -- 1.25 -- -- -0.0221 -- 1013 18 -- --
122.98 0.516 3.52 -- 0.168 1.17 -- -- 0.028 8.6 1012 19 -- --
141.65 0.556 3.58 -0.344 -- -- -- -- -0.221 -- -- -- -- --
143.93 0.561 3.57 -- 0.119 -- -- -- -0.183 9.79 -- -- -- --
124.56 0.52 3.53 -- -- 1.17 -- -- 0.0191 -- 1012 18 -- --
144.77 0.562 3.57 -- -- -- -- -- -0.183 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.00 atmosphere 995 720 > th dose dependent rect. 17 12
3 115.45 atmosphere 1015 720 < th dose dependent rect. 19 12
4 115.64 atmosphere 1015 270 < th dose dependent sin 8 NA
8 115.81 atmosphere 995 270 > th dose dependent sin 8 NA
15 116.13 atmosphere 1015 720 < th dose dependent rect. 15 17
17 116.16 temperature 30 4320 < th dose independent rect. 2 8
22 116.28 atmosphere 1010 90 < th dose dependent rect. 4 23
25 116.30 atmosphere 995 90 > th dose dependent rect. 17 23
27 116.33 atmosphere 1010 720 < th dose dependent sin 13 NA
40 116.41 atmosphere 995 720 > th dose dependent rect. 17 17
52 116.51 atmosphere 1015 10 < th dose dependent rect. 1 23
63 116.59 atmosphere 995 720 > th dose dependent sin 12 NA
71 116.68 temperature 30 4320 > th dose independent rect. 8 2
113 116.82 atmosphere 1015 90 < th dose dependent rect. 11 23
129 116.91 atmosphere 995 270 > th dose dependent rect. 14 23
146 117.04 atmosphere 1005 720 > th dose independent rect. 16 13
147 117.04 atmosphere 1010 90 < th dose dependent rect. 20 23
148 117.05 atmosphere 1010 90 < th dose dependent rect. 20 15
151 117.08 temperature 30 4320 > th dose dependent rect. 8 4
167 117.11 atmosphere 1010 30 < th dose dependent rect. 21 13
171 117.12 temperature 30 4320 > th dose dependent rect. 11 1
224 117.26 atmosphere 1015 720 < th dose dependent rect. 20 7
231 117.28 atmosphere 1010 270 < th dose dependent rect. 17 22
256 117.35 atmosphere 1010 10 < th dose dependent rect. 16 23
297 117.50 atmosphere 995 10 > th dose dependent rect. 15 23
313 117.56 temperature 30 4320 > th dose dependent sin 8 NA
317 117.58 temperature 30 4320 < th dose independent rect. 17 18
318 117.59 temperature 30 4320 > th dose independent rect. 17 18
334 117.67 atmosphere 1010 10 < th dose dependent rect. 21 23
362 117.71 atmosphere 1010 10 < th dose dependent rect. 13 23
379 117.77 atmosphere 1015 30 < th dose dependent rect. 9 23
404 117.86 atmosphere 995 720 > th dose dependent rect. 21 8
407 117.88 temperature 30 4320 > th dose independent sin 9 NA
416 117.94 atmosphere 1010 30 < th dose dependent no NA NA
459 118.01 temperature 10 4320 > th dose dependent rect. 11 1
466 118.03 temperature 30 4320 < th dose independent sin 9 NA
476 118.05 atmosphere 1010 30 < th dose dependent rect. 23 23
482 118.07 atmosphere 1010 30 < th dose dependent rect. 7 23
504 118.17 atmosphere 995 30 > th dose dependent no NA NA
554 118.32 atmosphere 995 720 > th dose dependent rect. 8 21
564 118.36 atmosphere 1005 720 > th dose independent sin 14 NA
568 118.36 atmosphere 995 270 > th dose dependent rect. 24 23
591 118.39 radiation 20 4320 > th dose dependent rect. 16 15
592 118.39 atmosphere 995 90 > th dose dependent rect. 2 23
640 118.58 atmosphere 1005 270 > th dose independent rect. 15 20
687 118.66 temperature 30 4320 < th dose independent rect. 17 1
743 118.80 atmosphere 1000 720 < th dose independent rect. 19 12
746 118.81 atmosphere 1015 270 < th dose dependent rect. 1 23
752 118.83 radiation 20 4320 > th dose dependent rect. 16 1
814 118.97 temperature 10 720 > th dose dependent rect. 20 21
845 119.05 temperature 10 4320 > th dose dependent rect. 11 4
887 119.12 temperature 10 4320 > th dose dependent rect. 14 1
929 119.23 atmosphere 995 270 > th dose dependent rect. 23 12
990 119.35 atmosphere 1000 270 < th dose dependent sin 7 NA