Os03g0580700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0580700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.63 | 0.487 | 6.38 | -1.23 | 0.258 | -1.92 | 0.808 | 0.263 | 0.332 | 4.58 | 19.88 | 4511 | -- | -- |
| 107.45 | 0.483 | 6.37 | -1.2 | 0.255 | -2.01 | 0.811 | -- | 0.349 | 4.51 | 19.8 | 4593 | -- | -- |
| 108.9 | 0.486 | 6.38 | -1.2 | 0.282 | -1.93 | -- | 0.157 | 0.333 | 5.05 | 19.7 | 4619 | -- | -- |
| 108.85 | 0.486 | 6.37 | -1.2 | 0.285 | -1.99 | -- | -- | 0.34 | 5.31 | 19.8 | 4610 | -- | -- |
| 112.71 | 0.494 | 6.38 | -1.2 | -- | -1.96 | -- | 0.126 | 0.343 | -- | 19.7 | 4385 | -- | -- |
| 171.4 | 0.614 | 6.25 | 0.0157 | 0.284 | -- | 0.717 | -- | 0.862 | 4.45 | -- | -- | -- | -- |
| 172.57 | 0.615 | 6.25 | 0.011 | 0.299 | -- | -- | -- | 0.858 | 5.22 | -- | -- | -- | -- |
| 111.97 | 0.493 | 6.38 | -1.31 | -- | -1.95 | -- | -- | 0.308 | -- | 19.8 | 5725 | -- | -- |
| 131.34 | 0.534 | 6.31 | -- | 0.26 | -1.26 | -- | -- | 0.599 | 5.5 | 19.7 | 3587 | -- | -- |
| 177.24 | 0.622 | 6.26 | 0.0214 | -- | -- | -- | -- | 0.866 | -- | -- | -- | -- | -- |
| 172.58 | 0.615 | 6.25 | -- | 0.299 | -- | -- | -- | 0.857 | 5.22 | -- | -- | -- | -- |
| 124.26 | 0.519 | 6.34 | -- | -- | -1.13 | -- | -- | 0.499 | -- | 22.39 | 2394 | -- | -- |
| 177.25 | 0.621 | 6.26 | -- | -- | -- | -- | -- | 0.863 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 20 |
| 7 | 107.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 20 |
| 9 | 107.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 10 | 18 |
| 28 | 107.69 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 36 | 107.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 22 |
| 46 | 107.97 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 63 | 108.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 64 | 108.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 22 |
| 85 | 108.28 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 86 | 108.28 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 90 | 108.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 22 |
| 100 | 108.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 142 | 108.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 150 | 108.56 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 163 | 108.62 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 181 | 108.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 284 | 109.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 307 | 109.35 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 349 | 109.52 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 353 | 109.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 359 | 109.55 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 389 | 109.66 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 391 | 109.66 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 396 | 109.67 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 0 | NA |
| 407 | 109.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 434 | 109.72 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 437 | 109.72 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 448 | 109.73 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 458 | 109.75 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 470 | 109.76 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 514 | 109.79 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 518 | 109.80 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 525 | 109.80 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 542 | 109.82 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 0 | NA |
| 549 | 109.82 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 597 | 109.85 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 22 |
| 621 | 109.87 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 631 | 109.87 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 690 | 109.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 791 | 110.00 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 801 | 110.00 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 874 | 110.06 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 890 | 110.08 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 950 | 110.13 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 11 |