Os03g0579900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0579900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.5 | 0.547 | 5.98 | -0.84 | 2.21 | -1.12 | 0.78 | -0.412 | -0.0377 | 8.62 | 24.4 | 923 | -- | -- |
| 135.65 | 0.542 | 5.99 | -0.912 | 2.2 | -1.08 | 0.711 | -- | -0.058 | 8.62 | 24.69 | 980 | -- | -- |
| 137.27 | 0.546 | 5.98 | -0.879 | 2.2 | -1.08 | -- | -0.0482 | -0.0501 | 8.59 | 24.5 | 956 | -- | -- |
| 137.27 | 0.546 | 5.99 | -0.887 | 2.2 | -1.08 | -- | -- | -0.0537 | 8.59 | 24.5 | 960 | -- | -- |
| 382.03 | 0.915 | 6.03 | -0.653 | -- | -1.12 | -- | -0.999 | 0.0128 | -- | 25.1 | 1479 | -- | -- |
| 152.23 | 0.578 | 5.94 | -0.596 | 2.12 | -- | 0.705 | -- | 0.164 | 8.45 | -- | -- | -- | -- |
| 153.8 | 0.581 | 5.94 | -0.575 | 2.12 | -- | -- | -- | 0.164 | 8.42 | -- | -- | -- | -- |
| 383.82 | 0.916 | 6.04 | -0.802 | -- | -1.05 | -- | -- | -0.0189 | -- | 25.1 | 1479 | -- | -- |
| 155.13 | 0.58 | 5.95 | -- | 2.17 | -0.671 | -- | -- | 0.116 | 8.54 | 24.4 | 882 | -- | -- |
| 403.26 | 0.938 | 6 | -0.564 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 162.5 | 0.596 | 5.93 | -- | 2.11 | -- | -- | -- | 0.228 | 8.44 | -- | -- | -- | -- |
| 399.56 | 0.934 | 6.01 | -- | -- | -0.801 | -- | -- | 0.113 | -- | 25.1 | 1479 | -- | -- |
| 411.64 | 0.947 | 5.98 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 8 | 132.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 18 | 132.87 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 26 | 133.08 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 29 | 133.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 32 | 133.30 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 39 | 133.36 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 5 |
| 87 | 134.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 113 | 134.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 114 | 134.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 130 | 134.58 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 132 | 134.59 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 136 | 134.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 147 | 134.75 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 149 | 134.75 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 10 | 6 |
| 150 | 134.76 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 170 | 134.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 186 | 134.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 196 | 134.98 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 10 |
| 209 | 135.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 241 | 135.18 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 243 | 135.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 247 | 135.20 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 267 | 135.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 269 | 135.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 271 | 135.25 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 277 | 135.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 281 | 135.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 308 | 135.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 310 | 135.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 13 |
| 327 | 135.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 328 | 135.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 337 | 135.48 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 12 |
| 339 | 135.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 342 | 135.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 351 | 135.53 | temperature | 25 | 90 | < th | dose independent | sin | 23 | NA |
| 354 | 135.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 360 | 135.57 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 365 | 135.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 386 | 135.64 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 405 | 135.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 406 | 135.70 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 12 |
| 428 | 135.74 | temperature | 25 | 90 | > th | dose independent | sin | 23 | NA |
| 496 | 135.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 506 | 135.93 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 511 | 135.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 530 | 135.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 553 | 136.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 576 | 136.08 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 612 | 136.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 623 | 136.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 691 | 136.27 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 14 |
| 698 | 136.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 773 | 136.40 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 22 | NA |
| 795 | 136.44 | temperature | 20 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 824 | 136.50 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 19 |
| 876 | 136.59 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 938 | 136.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 962 | 136.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |