Os03g0579200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0579200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.62 | 0.344 | 2.7 | 2.6 | 0.114 | -36 | -0.06 | 222 | 0.187 | 4.56 | 994.8 | 669 | -- | -- |
| 59.24 | 0.361 | 3.14 | 0.00415 | 0.13 | 0.0443 | -0.0401 | -- | 0.178 | 4.13 | 994.8 | 669 | -- | -- |
| 53.39 | 0.34 | 2.73 | 2.43 | 0.119 | -36.4 | -- | 224 | 0.186 | 4.89 | 994.6 | 668 | -- | -- |
| 56.93 | 0.351 | 3.14 | -0.0249 | 0.122 | 0.568 | -- | -- | 0.169 | 4.29 | 995.7 | 751 | -- | -- |
| 54.11 | 0.343 | 2.72 | 2.51 | -- | -37.3 | -- | 230 | 0.188 | -- | 994.7 | 676 | -- | -- |
| 59.24 | 0.361 | 3.14 | 0.00438 | 0.129 | -- | -0.0421 | -- | 0.177 | 4.12 | -- | -- | -- | -- |
| 59.24 | 0.36 | 3.14 | 0.0049 | 0.129 | -- | -- | -- | 0.178 | 4.27 | -- | -- | -- | -- |
| 57.69 | 0.354 | 3.14 | -0.0156 | -- | 0.678 | -- | -- | 0.19 | -- | 995.9 | 762 | -- | -- |
| 56.82 | 0.351 | 3.13 | -- | 0.129 | 0.682 | -- | -- | 0.191 | 4.84 | 995.8 | 758 | -- | -- |
| 60.15 | 0.362 | 3.14 | 0.0101 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 59.24 | 0.36 | 3.14 | -- | 0.129 | -- | -- | -- | 0.177 | 4.27 | -- | -- | -- | -- |
| 57.69 | 0.354 | 3.14 | -- | -- | 0.681 | -- | -- | 0.193 | -- | 995.8 | 762 | -- | -- |
| 60.15 | 0.362 | 3.14 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 53.26 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 1 |
| 3 | 53.33 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 4 | 53.43 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 45 | 53.43 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 87 | 53.52 | atmosphere | 995 | 720 | < th | dose independent | sin | 7 | NA |
| 89 | 53.65 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 93 | 53.70 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 102 | 53.70 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 125 | 53.92 | atmosphere | 995 | 720 | > th | dose independent | sin | 1 | NA |
| 128 | 54.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 196 | 54.53 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 228 | 54.71 | atmosphere | 995 | 720 | > th | dose independent | sin | 19 | NA |
| 232 | 54.73 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 427 | 54.81 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 439 | 54.95 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 704 | 55.15 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 711 | 55.32 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 727 | 55.54 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 20 | 7 |
| 732 | 55.60 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 1 |
| 746 | 55.70 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 747 | 55.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 765 | 55.78 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 17 |
| 767 | 55.79 | atmosphere | 995 | 720 | > th | dose independent | rect. | 12 | 7 |
| 794 | 55.85 | atmosphere | 995 | 720 | < th | dose independent | rect. | 17 | 2 |
| 814 | 55.85 | atmosphere | 995 | 720 | > th | dose independent | rect. | 11 | 23 |
| 819 | 55.87 | atmosphere | 995 | 720 | > th | dose independent | rect. | 12 | 17 |
| 842 | 55.89 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 863 | 55.90 | atmosphere | 995 | 720 | > th | dose independent | rect. | 16 | 8 |
| 892 | 55.96 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 900 | 55.99 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 906 | 56.00 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 936 | 56.00 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |