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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0578900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gibberellin MYB transcription factor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.07 (0.0314) R2 : 0.528
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.83 (0.0815) R2dE : 0.521 R2E : 0.524
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.117 (0.0662) R2dN8 : 0.00446 R2N8 : 0.00728
σ : 0.591
deviance : 160.91
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 5.214
memory length : 102
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.3
open length of G : 10.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.54 0.575 4.12 -0.574 0.903 1.33 0.143 -3.12 -0.0204 23.2 17.2 66 17.9 10
154 0.578 4.09 -0.343 0.665 1.4 -0.815 -- 0.0597 23.3 13.31 77 17.7 10
149.56 0.57 4.12 -0.569 0.888 1.34 -- -2.96 -0.0198 23.2 17.2 66 17.9 10.1
156.57 0.583 4.09 -0.302 0.681 1.35 -- -- 0.0638 23.3 13.39 75 17.8 9.93
156.77 0.583 4.08 -0.432 -- 2.07 -- -2.07 0.0879 -- 11.29 92 17.5 10.4
179.35 0.628 4.08 -0.216 1.59 -- -0.565 -- 0.162 22.9 -- -- -- --
180.7 0.63 4.08 -0.193 1.59 -- -- -- 0.164 22.9 -- -- -- --
159.19 0.588 4.05 -0.347 -- 1.84 -- -- 0.081 -- 6.695 99 17.4 10.3
158.7 0.587 4.08 -- 0.716 1.29 -- -- 0.105 23.2 12.88 73 17.8 9.93
337.47 0.858 4.04 -0.159 -- -- -- -- 0.175 -- -- -- -- --
181.69 0.631 4.08 -- 1.59 -- -- -- 0.185 22.9 -- -- -- --
160.91 0.591 4.07 -- -- 1.83 -- -- 0.117 -- 5.214 102 17.3 10.3
338.14 0.858 4.04 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.10 temperature 15.0 30 > th dose dependent rect. 18 10
11 155.38 temperature 15.0 270 > th dose dependent rect. 16 9
12 155.65 temperature 20.0 30 > th dose independent rect. 18 10
22 156.49 temperature 20.0 270 > th dose independent rect. 15 10
51 159.03 temperature 20.0 720 > th dose dependent rect. 16 3
78 160.44 temperature 25.0 720 > th dose independent rect. 16 3
85 160.88 temperature 20.0 30 > th dose independent rect. 7 21
116 161.89 temperature 25.0 30 > th dose independent rect. 18 7
141 162.55 atmosphere 1015.0 270 < th dose independent rect. 15 10
142 162.55 atmosphere 1015.0 30 < th dose independent rect. 18 10
165 162.97 radiation 1.0 30 > th dose independent rect. 14 17
167 163.05 temperature 30.0 90 < th dose dependent rect. 15 16
170 163.08 radiation 1.0 30 > th dose independent rect. 12 19
191 163.34 temperature 25.0 270 < th dose independent rect. 15 14
221 163.79 temperature 20.0 10 > th dose independent rect. 18 20
230 164.01 temperature 20.0 10 > th dose independent rect. 18 18
251 164.21 temperature 20.0 10 > th dose independent rect. 9 19
261 164.31 precipitation 0.1 10 < th dose independent rect. 14 17
262 164.31 precipitation 0.1 10 < th dose dependent rect. 14 17
277 164.48 temperature 20.0 90 > th dose independent rect. 20 8
289 164.63 temperature 30.0 30 < th dose dependent rect. 19 12
295 164.73 atmosphere 1015.0 30 < th dose independent rect. 7 21
337 165.04 temperature 25.0 270 > th dose independent rect. 16 16
389 165.57 radiation 1.0 30 > th dose independent rect. 7 7
406 165.67 radiation 10.0 90 < th dose independent rect. 17 11
413 165.72 radiation 40.0 30 < th dose independent rect. 14 17
422 165.77 temperature 25.0 270 > th dose independent sin 14 NA
431 165.82 wind 9.0 10 < th dose independent rect. 14 17
434 165.86 precipitation 0.1 10 < th dose independent rect. 7 7
436 165.86 precipitation 0.1 10 < th dose dependent rect. 7 7
447 165.92 temperature 10.0 10 > th dose independent rect. 7 7
450 165.92 atmosphere 995.0 10 > th dose independent rect. 7 7
451 165.92 atmosphere 1015.0 10 < th dose independent rect. 7 7
453 165.92 temperature 10.0 10 > th dose independent rect. 14 17
460 165.94 precipitation 0.1 10 < th dose independent rect. 12 19
462 165.94 precipitation 0.1 10 < th dose dependent rect. 12 19
478 166.00 temperature 10.0 1440 > th dose independent rect. 8 7
482 166.00 temperature 10.0 1440 > th dose independent rect. 15 17
486 166.00 temperature 20.0 10 > th dose dependent rect. 21 7
489 166.01 temperature 15.0 30 > th dose dependent rect. 18 18
512 166.16 precipitation 0.1 270 < th dose independent rect. 2 13
513 166.16 wind 9.0 10 < th dose independent rect. 4 14
514 166.16 precipitation 0.1 270 < th dose dependent rect. 2 13
516 166.17 radiation 1.0 270 > th dose independent rect. 15 22
521 166.19 atmosphere 1015.0 10 < th dose independent rect. 18 20
537 166.23 radiation 20.0 90 < th dose dependent rect. 17 11
538 166.24 humidity 50.0 30 > th dose independent rect. 7 7
553 166.33 wind 1.0 30 > th dose independent rect. 7 7
555 166.35 wind 9.0 30 < th dose independent rect. 7 7
556 166.35 atmosphere 995.0 10 > th dose independent rect. 14 17
581 166.47 wind 9.0 270 < th dose independent rect. 2 13
585 166.50 precipitation 0.1 30 < th dose independent rect. 4 14
587 166.50 precipitation 0.1 30 < th dose dependent rect. 4 14
590 166.51 atmosphere 1015.0 270 < th dose independent rect. 15 21
601 166.55 temperature 25.0 270 < th dose independent sin 15 NA
604 166.56 temperature 20.0 270 > th dose dependent sin 13 NA
607 166.57 wind 9.0 30 < th dose independent rect. 18 10
612 166.58 atmosphere 1015.0 30 < th dose independent rect. 18 18
615 166.59 temperature 10.0 30 > th dose independent rect. 18 10
616 166.59 humidity 50.0 30 > th dose independent rect. 18 10
620 166.59 temperature 10.0 30 > th dose independent rect. 4 14
622 166.59 atmosphere 1015.0 30 < th dose independent rect. 4 14
624 166.60 atmosphere 995.0 30 > th dose independent rect. 18 10
640 166.66 temperature 25.0 10 < th dose dependent rect. 16 11
652 166.69 temperature 10.0 10 > th dose dependent rect. 7 21
671 166.75 radiation 1.0 30 > th dose independent rect. 7 5
680 166.76 temperature 10.0 30 > th dose dependent rect. 4 14
682 166.76 temperature 10.0 30 > th dose dependent rect. 18 20
693 166.81 temperature 20.0 10 > th dose independent rect. 16 22
696 166.81 temperature 25.0 720 > th dose dependent rect. 15 17
703 166.82 temperature 25.0 10 < th dose dependent rect. 14 13
719 166.85 temperature 25.0 90 < th dose dependent sin 15 NA
738 166.92 temperature 10.0 270 > th dose independent rect. 15 11
739 166.92 temperature 10.0 270 > th dose independent rect. 2 13
740 166.92 atmosphere 1015.0 270 < th dose independent rect. 2 13
753 166.95 wind 9.0 270 < th dose independent rect. 15 11
773 166.99 wind 1.0 30 > th dose independent rect. 7 5
779 167.00 atmosphere 995.0 30 > th dose independent rect. 4 14
781 167.01 radiation 40.0 270 < th dose independent rect. 15 11
812 167.06 atmosphere 995.0 270 > th dose independent rect. 2 13
831 167.10 temperature 25.0 720 < th dose independent rect. 15 5
844 167.12 wind 9.0 30 < th dose independent rect. 12 19
862 167.17 temperature 10.0 1440 > th dose independent rect. 8 5
865 167.17 atmosphere 995.0 1440 > th dose independent rect. 8 5
866 167.17 temperature 10.0 1440 > th dose independent rect. 13 19
873 167.18 temperature 25.0 10 < th dose dependent sin 14 NA
879 167.20 precipitation 0.1 30 < th dose independent rect. 7 5
881 167.20 temperature 25.0 270 > th dose dependent sin 11 NA
882 167.20 precipitation 0.1 30 < th dose dependent rect. 7 5
887 167.21 temperature 20.0 720 > th dose dependent sin 17 NA
897 167.24 temperature 10.0 30 > th dose independent rect. 7 5
899 167.24 atmosphere 995.0 30 > th dose independent rect. 7 5
900 167.24 atmosphere 1015.0 30 < th dose independent rect. 7 5
902 167.24 temperature 10.0 30 > th dose independent rect. 12 19
908 167.25 temperature 10.0 720 > th dose dependent rect. 4 2
945 167.37 humidity 50.0 30 > th dose independent rect. 7 5
962 167.40 wind 9.0 30 < th dose independent rect. 7 5
974 167.42 temperature 20.0 720 > th dose dependent rect. 4 1