Os03g0577500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9 elicitor response-like protein.
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Os03g0577500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9 elicitor response-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.77 | 0.321 | 11.3 | -0.804 | 0.251 | -1.86 | 0.526 | -2.12 | -0.0363 | 3.68 | 0.2506 | 1479 | -- | -- |
| 48.27 | 0.324 | 11.3 | -0.926 | 0.245 | -1.26 | 0.422 | -- | -0.0211 | 4.41 | 0.2087 | 1484 | -- | -- |
| 47.55 | 0.321 | 11.3 | -0.826 | 0.24 | -1.83 | -- | -2 | -0.0389 | 3.87 | 0.2248 | 1474 | -- | -- |
| 48.77 | 0.325 | 11.3 | -0.97 | 0.244 | -1.31 | -- | -- | -0.0292 | 3.91 | 0.2917 | 1487 | -- | -- |
| 50.16 | 0.33 | 11.3 | -0.801 | -- | -1.82 | -- | -2.11 | -0.0394 | -- | 0.2361 | 1456 | -- | -- |
| 65.79 | 0.38 | 11.3 | -0.644 | 0.209 | -- | 0.55 | -- | 0.0869 | 5.57 | -- | -- | -- | -- |
| 66.48 | 0.382 | 11.3 | -0.64 | 0.215 | -- | -- | -- | 0.0848 | 6.12 | -- | -- | -- | -- |
| 51.51 | 0.334 | 11.3 | -0.952 | -- | -1.26 | -- | -- | -0.0298 | -- | 0.32 | 1464 | -- | -- |
| 70.15 | 0.39 | 11.3 | -- | 0.95 | -1.36 | -- | -- | 0.00646 | 4.41 | 1.83 | 1925 | -- | -- |
| 68.89 | 0.388 | 11.3 | -0.634 | -- | -- | -- | -- | 0.0896 | -- | -- | -- | -- | -- |
| 77.29 | 0.411 | 11.3 | -- | 0.206 | -- | -- | -- | 0.156 | 6.28 | -- | -- | -- | -- |
| 72.37 | 0.396 | 11.3 | -- | -- | -0.717 | -- | -- | 0.047 | -- | 1.65 | 1458 | -- | -- |
| 79.5 | 0.416 | 11.3 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 2 | 46.04 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 4 | 46.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 6 | 46.14 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 18 | 46.32 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 39 | 47.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 40 | 47.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 74 | 48.06 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 75 | 48.07 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 79 | 48.10 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 83 | 48.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 87 | 48.13 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 90 | 48.14 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 94 | 48.15 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 95 | 48.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 96 | 48.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 2 |
| 97 | 48.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 115 | 48.24 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 117 | 48.24 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 125 | 48.26 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 161 | 48.32 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 166 | 48.33 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 168 | 48.33 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 172 | 48.34 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 183 | 48.34 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 242 | 48.40 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 264 | 48.43 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 266 | 48.43 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 274 | 48.43 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 279 | 48.44 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 297 | 48.45 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 322 | 48.46 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 329 | 48.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 384 | 48.50 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 393 | 48.51 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 409 | 48.52 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 422 | 48.53 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 460 | 48.55 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 546 | 48.60 | atmosphere | 1005.0 | 43200 | < th | dose independent | no | NA | NA |
| 555 | 48.60 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 587 | 48.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 597 | 48.64 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 612 | 48.64 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 614 | 48.64 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 623 | 48.65 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 642 | 48.66 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 655 | 48.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 666 | 48.68 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 679 | 48.69 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 680 | 48.69 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 683 | 48.69 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 699 | 48.70 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 700 | 48.70 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 719 | 48.71 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 763 | 48.76 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 764 | 48.76 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 779 | 48.77 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 872 | 48.89 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 879 | 48.90 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 887 | 48.90 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 930 | 48.99 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 937 | 48.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 939 | 49.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 944 | 49.00 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 945 | 49.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 955 | 49.03 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 956 | 49.03 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 967 | 49.04 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 971 | 49.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 984 | 49.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 9 |