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Os03g0577000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribosomal protein S3 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0211) R2 : 0.401
β1 : 1.31 (0.0775) R2dD : 0.392 R2D : 0.306
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.332 (0.0452) R2dN8 : 0.095 R2N8 : 0.0089
σ : 0.397
deviance : 72.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.45 0.317 13.4 1.35 0.635 0.462 0.869 0.961 0.323 19 39.5 73 -- --
46.86 0.319 13.4 1.36 0.635 0.362 0.763 -- 0.336 18.8 37.63 72 -- --
47.35 0.32 13.4 1.35 0.637 0.44 -- 0.814 0.322 18.9 39.49 72 -- --
48.35 0.324 13.4 1.35 0.635 0.363 -- -- 0.33 18.8 37.5 74 -- --
59.96 0.361 13.4 1.35 -- 0.462 -- 0.866 0.276 -- 40.45 737 -- --
49.65 0.33 13.4 1.34 0.635 -- 0.751 -- 0.343 18.2 -- -- -- --
51.03 0.335 13.4 1.33 0.639 -- -- -- 0.346 18.1 -- -- -- --
59.67 0.36 13.4 1.25 -- 0.531 -- -- 0.24 -- 40.45 734 -- --
95.44 0.457 13.5 -- 0.622 0.282 -- -- 0.2 18.7 40 171 -- --
72.19 0.397 13.4 1.31 -- -- -- -- 0.332 -- -- -- -- --
97.8 0.463 13.5 -- 0.62 -- -- -- 0.198 18.2 -- -- -- --
101.11 0.468 13.5 -- -- 0.654 -- -- 0.151 -- 40 748 -- --
117.73 0.506 13.5 -- -- -- -- -- 0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.11 wind 3.0 4320 > th dose independent rect. 8 1
2 42.12 temperature 20.0 270 > th dose dependent rect. 9 1
3 42.34 wind 3.0 4320 < th dose independent rect. 8 1
4 42.38 temperature 20.0 270 > th dose dependent rect. 8 3
5 42.39 temperature 15.0 90 > th dose dependent rect. 8 7
7 42.51 atmosphere 1005.0 90 > th dose dependent rect. 3 5
15 42.70 temperature 10.0 43200 > th dose independent rect. 9 7
18 42.75 temperature 20.0 10 > th dose dependent rect. 9 6
25 42.86 wind 5.0 4320 < th dose dependent rect. 8 1
28 42.93 atmosphere 1000.0 10 > th dose dependent rect. 3 6
35 42.99 radiation 20.0 1440 < th dose dependent rect. 11 2
38 43.02 atmosphere 1005.0 270 > th dose dependent rect. 3 2
46 43.08 atmosphere 1000.0 270 > th dose dependent rect. 24 7
47 43.09 humidity 90.0 10 < th dose independent rect. 2 7
54 43.13 wind 1.0 4320 > th dose dependent rect. 8 1
76 43.31 radiation 10.0 1440 > th dose independent rect. 11 2
92 43.43 radiation 10.0 1440 < th dose dependent rect. 9 6
101 43.51 atmosphere 1005.0 90 > th dose independent rect. 3 5
104 43.54 wind 5.0 90 < th dose independent rect. 3 5
132 43.68 wind 5.0 270 < th dose independent rect. 3 2
134 43.69 atmosphere 1005.0 270 > th dose independent rect. 3 2
138 43.71 radiation 20.0 1440 < th dose independent rect. 12 1
169 43.84 wind 1.0 270 > th dose independent rect. 3 2
170 43.84 atmosphere 1005.0 10 > th dose independent rect. 3 6
174 43.85 temperature 10.0 90 > th dose dependent rect. 8 19
221 43.99 atmosphere 1005.0 270 > th dose independent rect. 1 6
228 44.01 radiation 40.0 270 > th dose independent rect. 9 1
229 44.01 precipitation 0.1 90 < th dose independent rect. 8 19
233 44.01 precipitation 0.1 90 < th dose dependent rect. 8 19
253 44.08 wind 1.0 14400 > th dose independent rect. 24 2
255 44.08 precipitation 0.1 90 < th dose independent rect. 3 5
257 44.08 precipitation 0.1 90 < th dose dependent rect. 3 5
259 44.09 radiation 1.0 1440 < th dose independent rect. 11 1
271 44.11 temperature 10.0 10 > th dose dependent rect. 9 18
273 44.12 wind 5.0 10 < th dose independent rect. 3 6
277 44.13 wind 1.0 14400 < th dose independent rect. 24 2
278 44.13 temperature 25.0 270 > th dose independent rect. 8 3
286 44.15 radiation 40.0 90 < th dose independent rect. 3 16
291 44.17 temperature 10.0 90 > th dose dependent rect. 3 5
296 44.18 temperature 10.0 90 > th dose independent rect. 3 5
298 44.18 temperature 30.0 90 < th dose independent rect. 3 5
299 44.18 humidity 50.0 90 > th dose independent rect. 3 5
301 44.18 atmosphere 995.0 90 > th dose independent rect. 3 5
303 44.18 atmosphere 1015.0 90 < th dose independent rect. 3 5
304 44.18 temperature 10.0 90 > th dose independent rect. 8 19
322 44.19 wind 9.0 90 < th dose independent rect. 8 19
331 44.22 temperature 25.0 270 > th dose independent rect. 9 1
332 44.22 atmosphere 995.0 90 > th dose independent rect. 8 19
338 44.23 wind 9.0 90 < th dose dependent rect. 3 5
341 44.24 temperature 15.0 90 > th dose independent rect. 15 17
344 44.25 radiation 40.0 90 < th dose independent rect. 3 5
351 44.27 precipitation 0.1 270 < th dose independent rect. 3 2
354 44.27 precipitation 0.1 270 < th dose dependent rect. 3 2
356 44.28 precipitation 0.1 90 < th dose independent rect. 8 7
357 44.28 wind 1.0 4320 > th dose dependent rect. 6 4
361 44.28 precipitation 0.1 90 < th dose dependent rect. 8 7
365 44.30 wind 1.0 90 > th dose independent rect. 8 7
366 44.30 wind 5.0 4320 < th dose dependent rect. 6 4
373 44.32 radiation 1.0 270 > th dose dependent rect. 9 1
379 44.33 wind 5.0 270 < th dose independent rect. 1 6
383 44.34 temperature 25.0 270 > th dose dependent rect. 19 17
395 44.37 temperature 10.0 90 > th dose independent rect. 8 7
396 44.37 atmosphere 1015.0 90 < th dose independent rect. 8 7
408 44.39 atmosphere 995.0 90 > th dose independent rect. 8 7
413 44.40 humidity 50.0 90 > th dose independent rect. 8 7
426 44.42 wind 9.0 90 < th dose independent rect. 8 7
434 44.43 radiation 1.0 270 < th dose dependent rect. 3 2
445 44.45 temperature 10.0 270 > th dose independent rect. 3 2
447 44.45 temperature 30.0 270 < th dose independent rect. 3 2
448 44.45 humidity 50.0 270 > th dose independent rect. 3 2
451 44.45 atmosphere 995.0 270 > th dose independent rect. 3 2
452 44.45 atmosphere 1010.0 270 < th dose independent rect. 3 2
454 44.45 radiation 20.0 270 < th dose independent rect. 3 2
458 44.45 temperature 10.0 270 > th dose independent rect. 5 22
468 44.46 precipitation 0.1 10 < th dose independent rect. 3 6
470 44.46 temperature 15.0 10 > th dose independent rect. 15 18
471 44.46 radiation 30.0 270 < th dose dependent rect. 3 2
473 44.46 precipitation 0.1 10 < th dose dependent rect. 3 6
479 44.47 wind 9.0 90 < th dose independent rect. 15 17
494 44.49 radiation 1.0 90 > th dose independent rect. 8 7
495 44.49 precipitation 0.1 270 < th dose independent rect. 5 22
500 44.49 precipitation 0.1 270 < th dose dependent rect. 5 22
501 44.50 radiation 1.0 270 < th dose independent rect. 3 2
506 44.50 radiation 40.0 90 < th dose independent rect. 15 17
510 44.51 precipitation 0.1 10 < th dose independent rect. 9 18
515 44.51 precipitation 0.1 10 < th dose dependent rect. 9 18
519 44.52 atmosphere 1015.0 90 < th dose independent rect. 15 17
521 44.52 wind 9.0 270 < th dose independent rect. 5 22
522 44.52 wind 9.0 270 < th dose dependent rect. 4 1
531 44.53 temperature 10.0 10 > th dose dependent rect. 3 6
535 44.54 radiation 1.0 10 > th dose independent rect. 9 6
557 44.57 radiation 40.0 10 < th dose independent rect. 4 16
559 44.57 temperature 20.0 4320 < th dose dependent rect. 17 2
573 44.59 humidity 50.0 10 > th dose independent rect. 9 6
579 44.60 wind 9.0 14400 < th dose independent rect. 23 4
582 44.60 temperature 10.0 10 > th dose independent rect. 9 6
584 44.60 atmosphere 995.0 10 > th dose independent rect. 9 6
585 44.60 atmosphere 1015.0 10 < th dose independent rect. 9 6
586 44.60 precipitation 0.1 10 < th dose independent rect. 9 6
589 44.60 wind 9.0 10 < th dose dependent rect. 4 5
590 44.60 precipitation 0.1 10 < th dose dependent rect. 9 6
596 44.61 wind 9.0 14400 < th dose independent rect. 22 6
597 44.61 radiation 40.0 90 < th dose independent rect. 13 19
607 44.62 humidity 90.0 90 < th dose independent rect. 8 7
608 44.62 atmosphere 1015.0 10 < th dose independent rect. 15 18
616 44.63 temperature 10.0 10 > th dose independent rect. 3 6
618 44.63 temperature 30.0 10 < th dose independent rect. 3 6
619 44.63 humidity 50.0 10 > th dose independent rect. 3 6
621 44.63 atmosphere 995.0 10 > th dose independent rect. 3 6
622 44.63 atmosphere 1015.0 10 < th dose independent rect. 3 6
626 44.63 temperature 10.0 10 > th dose independent rect. 9 18
635 44.64 atmosphere 995.0 10 > th dose independent rect. 9 18
636 44.64 humidity 50.0 90 > th dose independent rect. 8 19
640 44.65 wind 1.0 90 > th dose independent rect. 3 5
644 44.65 wind 9.0 10 < th dose independent rect. 9 18
684 44.67 radiation 30.0 270 > th dose dependent rect. 9 1
743 44.71 wind 9.0 10 < th dose independent rect. 9 6
745 44.71 temperature 10.0 1440 > th dose independent rect. 10 6
752 44.71 temperature 10.0 1440 > th dose independent rect. 16 18
760 44.72 precipitation 0.1 90 < th dose independent rect. 15 17
782 44.72 precipitation 0.1 90 < th dose dependent rect. 15 17
788 44.73 humidity 50.0 90 > th dose independent rect. 15 17
833 44.78 humidity 90.0 10 < th dose independent rect. 9 6
836 44.78 atmosphere 995.0 90 > th dose independent rect. 15 17
841 44.79 radiation 40.0 90 < th dose independent rect. 11 22
852 44.80 precipitation 0.1 10 < th dose independent rect. 15 18
859 44.80 precipitation 0.1 10 < th dose dependent rect. 15 18
880 44.82 temperature 10.0 270 > th dose dependent rect. 3 2
895 44.83 atmosphere 1005.0 10 < th dose dependent rect. 24 10
901 44.84 wind 1.0 270 > th dose independent rect. 1 6
928 44.85 atmosphere 1005.0 90 < th dose dependent rect. 24 9
931 44.86 atmosphere 995.0 270 > th dose independent rect. 5 22
944 44.87 radiation 40.0 10 < th dose independent rect. 15 18
956 44.88 temperature 10.0 1440 > th dose independent rect. 4 6
960 44.88 atmosphere 995.0 1440 > th dose independent rect. 4 6
961 44.88 atmosphere 1015.0 1440 < th dose independent rect. 4 6
965 44.88 temperature 10.0 1440 > th dose independent rect. 10 18
991 44.90 wind 1.0 90 > th dose independent rect. 8 19