Os03g0576100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os03g0576100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.82 | 0.662 | 2.94 | 0.305 | 0.146 | 12.6 | -0.113 | 25.6 | -0.0359 | 13.6 | 1016 | 1567 | -- | -- |
| 215.38 | 0.684 | 2.85 | 0.143 | 0.00128 | 0.363 | 0.0724 | -- | -0.0461 | 19 | 1017 | 985 | -- | -- |
| 197.94 | 0.655 | 2.95 | 0.353 | 0.144 | 15.2 | -- | 31.1 | -0.0526 | 14.1 | 1016 | 1542 | -- | -- |
| 208.22 | 0.672 | 2.84 | 0.161 | 0.0106 | 0.723 | -- | -- | 0.00351 | 18.1 | 1014 | 3583 | -- | -- |
| 198.64 | 0.656 | 3 | 0.427 | -- | 21.5 | -- | 43.9 | -0.023 | -- | 1016 | 1520 | -- | -- |
| 213.9 | 0.686 | 2.85 | 0.125 | 0.175 | -- | 0.00501 | -- | -0.0488 | 13.1 | -- | -- | -- | -- |
| 213.9 | 0.685 | 2.85 | 0.126 | 0.175 | -- | -- | -- | -0.0488 | 13.1 | -- | -- | -- | -- |
| 208.23 | 0.672 | 2.84 | 0.156 | -- | 0.72 | -- | -- | 0.00819 | -- | 1014 | 3584 | -- | -- |
| 207.33 | 0.671 | 2.84 | -- | 0.148 | 0.717 | -- | -- | -0.012 | 12.8 | 1014 | 3555 | -- | -- |
| 215.8 | 0.686 | 2.85 | 0.119 | -- | -- | -- | -- | -0.0523 | -- | -- | -- | -- | -- |
| 214.31 | 0.685 | 2.85 | -- | 0.173 | -- | -- | -- | -0.0628 | 13.1 | -- | -- | -- | -- |
| 208.83 | 0.673 | 2.84 | -- | -- | 0.706 | -- | -- | -0.0116 | -- | 1014 | 3574 | -- | -- |
| 216.17 | 0.686 | 2.85 | -- | -- | -- | -- | -- | -0.0655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.44 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 2 | 193.63 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 1 |
| 3 | 194.06 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 2 |
| 4 | 194.15 | humidity | 70 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 20 | 194.53 | humidity | 70 | 30 | < th | dose independent | rect. | 8 | 2 |
| 102 | 197.03 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 103 | 197.05 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 114 | 197.10 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 129 | 197.10 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 144 | 197.11 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 147 | 197.14 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 159 | 197.18 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 166 | 197.27 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 191 | 197.50 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 194 | 197.55 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 204 | 197.63 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 205 | 197.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 296 | 198.66 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 3 | NA |
| 297 | 198.66 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 339 | 198.89 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 365 | 198.90 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 408 | 198.92 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 424 | 198.95 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 470 | 199.33 | temperature | 20 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 501 | 199.86 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 1 |
| 503 | 199.94 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 4 |
| 508 | 200.05 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 509 | 200.06 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 539 | 200.33 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 23 | NA |
| 542 | 200.41 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 4 |
| 554 | 200.50 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 556 | 200.51 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 558 | 200.52 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 4 | NA |
| 560 | 200.53 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 567 | 200.55 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 6 |
| 582 | 200.71 | temperature | 20 | 270 | < th | dose dependent | sin | 1 | NA |
| 586 | 200.75 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 5 | NA |
| 609 | 200.91 | temperature | 20 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 638 | 201.00 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 23 | NA |
| 667 | 201.19 | humidity | 50 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 669 | 201.19 | humidity | 50 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 709 | 201.30 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 878 | 201.86 | wind | 3 | 90 | > th | dose independent | rect. | 9 | 1 |
| 893 | 201.97 | humidity | 90 | 30 | < th | dose independent | rect. | 5 | 1 |
| 953 | 202.11 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 976 | 202.16 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 1 | 1 |