Os03g0576000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0576000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, putative npRNA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.89 | 0.728 | 5.27 | 0.581 | 1.7 | 0.642 | 1.03 | 6.31 | -1.13 | 23.6 | 18 | 20 | -- | -- |
| 256.38 | 0.746 | 5.36 | -0.419 | 1.91 | 1.42 | 0.0999 | -- | -1.29 | 23.7 | 26 | 2 | -- | -- |
| 242.68 | 0.726 | 5.26 | 0.53 | 1.64 | 0.645 | -- | 6.01 | -1.11 | 23.7 | 17.3 | 140 | -- | -- |
| 254.69 | 0.743 | 5.37 | -0.484 | 1.81 | 1.35 | -- | -- | -1.34 | 23.9 | 26.1 | 2 | -- | -- |
| 367.95 | 0.893 | 5.28 | 0.34 | -- | 1.67 | -- | 5.64 | -1.31 | -- | 14.3 | 812 | -- | -- |
| 280.11 | 0.785 | 5.36 | -0.321 | 1.51 | -- | -0.598 | -- | -1.29 | 23.1 | -- | -- | -- | -- |
| 281.62 | 0.786 | 5.36 | -0.296 | 1.52 | -- | -- | -- | -1.28 | 23.1 | -- | -- | -- | -- |
| 368.16 | 0.894 | 5.38 | -0.649 | -- | 1.4 | -- | -- | -1.5 | -- | 22.98 | 846 | -- | -- |
| 260.66 | 0.752 | 5.36 | -- | 1.77 | 1.23 | -- | -- | -1.28 | 23.8 | 26.13 | 2 | -- | -- |
| 425.05 | 0.963 | 5.32 | -0.261 | -- | -- | -- | -- | -1.27 | -- | -- | -- | -- | -- |
| 283.92 | 0.788 | 5.35 | -- | 1.51 | -- | -- | -- | -1.25 | 23 | -- | -- | -- | -- |
| 378.08 | 0.906 | 5.35 | -- | -- | 1.26 | -- | -- | -1.39 | -- | 23.19 | 834 | -- | -- |
| 426.84 | 0.964 | 5.32 | -- | -- | -- | -- | -- | -1.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 3 | 227.68 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 6 | 228.17 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 7 | 228.28 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 8 | 228.30 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 11 | 228.47 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 15 | 228.77 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 49 | 229.38 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 53 | 229.45 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 58 | 229.58 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 284 | 234.46 | wind | 5 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 292 | 234.56 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 346 | 235.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 379 | 235.69 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 407 | 236.05 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 438 | 236.41 | wind | 5 | 14400 | > th | dose independent | sin | 12 | NA |
| 447 | 236.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 551 | 237.57 | wind | 5 | 14400 | > th | dose dependent | sin | 12 | NA |
| 559 | 237.63 | temperature | 10 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 564 | 237.67 | wind | 9 | 14400 | > th | dose dependent | sin | 11 | NA |
| 590 | 237.94 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 598 | 237.99 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 629 | 238.17 | wind | 5 | 14400 | < th | dose independent | sin | 12 | NA |
| 693 | 238.73 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 734 | 239.25 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 742 | 239.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 743 | 239.34 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 749 | 239.37 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 789 | 239.81 | temperature | 25 | 10 | < th | dose dependent | sin | 23 | NA |
| 816 | 240.05 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 827 | 240.15 | wind | 7 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 871 | 240.46 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 914 | 240.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 919 | 240.77 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 931 | 240.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 932 | 240.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 961 | 241.03 | wind | 7 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 984 | 241.20 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 985 | 241.22 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 5 |