Os03g0575700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0575700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.69 | 0.442 | 11.3 | -0.668 | 3.83 | 2.91 | -0.279 | 1.92 | -0.531 | 3.65 | 7.89 | 281 | 22.1 | -- |
| 91.03 | 0.444 | 11.4 | -0.85 | 2.65 | 3.98 | -1.48 | -- | -0.629 | 1.65 | -1.475 | 332 | 0.255 | -- |
| 88.83 | 0.439 | 11.3 | -0.666 | 3.84 | 3.02 | -- | 2.06 | -0.528 | 3.53 | 6.931 | 285 | 22.1 | -- |
| 97.02 | 0.459 | 11.3 | -0.795 | 3.72 | 2.98 | -- | -- | -0.573 | 3.59 | 8.797 | 259 | 22.1 | -- |
| 119.15 | 0.508 | 11.3 | -0.673 | -- | 3.92 | -- | 0.0427 | -0.526 | -- | -12.2 | 32 | 0.587 | -- |
| 130.55 | 0.536 | 11.2 | -0.476 | 3.73 | -- | -0.0149 | -- | -0.355 | 5.86 | -- | -- | -- | -- |
| 130.55 | 0.535 | 11.2 | -0.477 | 3.73 | -- | -- | -- | -0.355 | 5.86 | -- | -- | -- | -- |
| 119.03 | 0.508 | 11.3 | -0.636 | -- | 3.9 | -- | -- | -0.51 | -- | -14.73 | 29 | 0.55 | -- |
| 112.49 | 0.494 | 11.3 | -- | 3.77 | 3.49 | -- | -- | -0.453 | 2.82 | -1.279 | 274 | 22.3 | -- |
| 852.77 | 1.36 | 11.3 | -0.363 | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
| 136.54 | 0.547 | 11.2 | -- | 3.73 | -- | -- | -- | -0.302 | 5.87 | -- | -- | -- | -- |
| 129.08 | 0.529 | 11.3 | -- | -- | 3.86 | -- | -- | -0.412 | -- | -25.57 | 21 | 0.443 | -- |
| 856.25 | 1.37 | 11.3 | -- | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 2 | 81.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 41 | 88.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 42 | 88.91 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 52 | 89.73 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 74 | 90.85 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 105 | 91.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 116 | 91.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 123 | 92.01 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 12 |
| 154 | 92.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 165 | 93.08 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 180 | 93.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 229 | 94.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 12 |
| 243 | 94.31 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 258 | 94.55 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 3 |
| 313 | 95.26 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 5 |
| 314 | 95.28 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 14 |
| 333 | 95.58 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 10 |
| 370 | 96.00 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 398 | 96.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 479 | 97.33 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 10 |
| 536 | 97.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 556 | 98.24 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 575 | 98.49 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 21 |
| 581 | 98.57 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 614 | 98.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 618 | 98.92 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 662 | 99.37 | temperature | 30 | 10 | < th | dose independent | sin | 22 | NA |
| 685 | 99.53 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 705 | 99.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 766 | 100.19 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 795 | 100.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 812 | 100.55 | temperature | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 826 | 100.62 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 868 | 101.00 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 4 |
| 957 | 101.63 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 10 |
| 986 | 101.80 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 14 |