Os03g0575500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0575500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.82 | 0.381 | 12.2 | -0.472 | 0.478 | 0.842 | 0.256 | -1.02 | -0.135 | 1.2 | 29.44 | 10 | -- | -- |
| 67.64 | 0.383 | 12.2 | -0.435 | 0.48 | 0.839 | -0.479 | -- | -0.141 | 0.968 | 30.51 | 9 | -- | -- |
| 65.91 | 0.378 | 12.2 | -0.471 | 0.466 | 0.848 | -- | -0.827 | -0.138 | 1.28 | 29.05 | 9 | -- | -- |
| 68.93 | 0.387 | 12.2 | -0.443 | 0.463 | 0.835 | -- | -- | -0.134 | 1.29 | 28.16 | 9 | -- | -- |
| 69.87 | 0.389 | 12.2 | -0.452 | -- | 1.17 | -- | -0.803 | -0.126 | -- | 25.7 | 9 | -- | -- |
| 80.72 | 0.421 | 12.3 | -0.493 | 1.2 | -- | -0.494 | -- | -0.145 | 0.544 | -- | -- | -- | -- |
| 81.76 | 0.423 | 12.3 | -0.474 | 1.2 | -- | -- | -- | -0.143 | 0.534 | -- | -- | -- | -- |
| 72.92 | 0.398 | 12.2 | -0.425 | -- | 1.15 | -- | -- | -0.125 | -- | 25.12 | 9 | -- | -- |
| 74.1 | 0.401 | 12.2 | -- | 0.46 | 0.841 | -- | -- | -0.0911 | 1.29 | 28.2 | 8 | -- | -- |
| 172.58 | 0.614 | 12.2 | -0.432 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 87.68 | 0.438 | 12.2 | -- | 1.2 | -- | -- | -- | -0.09 | 0.514 | -- | -- | -- | -- |
| 77.66 | 0.41 | 12.2 | -- | -- | 1.15 | -- | -- | -0.073 | -- | 25.19 | 10 | -- | -- |
| 177.5 | 0.622 | 12.2 | -- | -- | -- | -- | -- | -0.0745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.38 | radiation | 30 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 3 | 65.47 | radiation | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 4 | 65.56 | radiation | 30 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 10 | 65.93 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 12 | 65.96 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 15 | 66.31 | radiation | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 17 | 66.38 | radiation | 20 | 10 | < th | dose independent | rect. | 16 | 23 |
| 19 | 66.41 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 20 | 66.42 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 30 | 66.66 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 37 | 66.87 | radiation | 30 | 10 | < th | dose dependent | rect. | 16 | 19 |
| 38 | 66.89 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 39 | 66.91 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 44 | 66.98 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 47 | 67.06 | radiation | 40 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 48 | 67.14 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 23 |
| 61 | 67.40 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 62 | 67.41 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 14 |
| 65 | 67.48 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 66 | 67.48 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 68 | 67.51 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 70 | 67.52 | radiation | 20 | 10 | < th | dose independent | rect. | 16 | 18 |
| 72 | 67.53 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 73 | 67.54 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 75 | 67.55 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 116 | 67.62 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 194 | 67.73 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 203 | 67.80 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 207 | 67.82 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 238 | 67.85 | radiation | 20 | 10 | < th | dose independent | sin | 0 | NA |
| 243 | 67.87 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 257 | 67.93 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 10 |
| 273 | 67.96 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 7 |
| 275 | 67.98 | radiation | 1 | 10 | > th | dose dependent | sin | 23 | NA |
| 282 | 68.04 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 23 |
| 286 | 68.06 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 315 | 68.19 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 19 |
| 319 | 68.21 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 18 |
| 335 | 68.26 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 343 | 68.29 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 450 | 68.46 | radiation | 20 | 10 | > th | dose independent | sin | 1 | NA |
| 453 | 68.47 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 9 |
| 481 | 68.48 | radiation | 20 | 10 | > th | dose independent | no | NA | NA |
| 589 | 68.51 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 595 | 68.52 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 598 | 68.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 601 | 68.54 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 16 |
| 604 | 68.56 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 651 | 68.79 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 17 |
| 669 | 68.84 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 702 | 68.91 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 12 |
| 730 | 68.96 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 21 |
| 778 | 69.07 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 17 |
| 803 | 69.11 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 821 | 69.15 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 889 | 69.30 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 16 |