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Os03g0574900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.82 (0.0365) R2 : 0.814
β1 : 1.78 (0.134) R2dD : 0.0761 R2D : 0.0511
β2 : 4.03 (0.0946) R2dC : 0.775 R2C : 0.684
β3 : -1.03 (0.0801) R2dE : 0.0733 R2E : -0.0433
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.178 (0.0787) R2dN8 : 0.00292 R2N8 : -0.0106
σ : 0.678
deviance : 211.94
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C
peak time of C : 7.68
E
wheather : temperature
threshold : 20.55
memory length : 130
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 18.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.24 0.683 6.81 1.86 4.07 -1.01 -0.188 0.439 0.185 7.72 20.51 117 17.1 18.1
212.11 0.678 6.81 1.83 4.06 -1.03 -0.131 -- 0.176 7.69 20.5 115 17.1 18
211.2 0.677 6.81 1.85 4.06 -1.01 -- 0.426 0.187 7.7 20.5 115 17.1 18
211.94 0.678 6.82 1.78 4.03 -1.03 -- -- 0.178 7.68 20.55 130 16.8 18.1
503.77 1.05 6.92 2.93 -- -4.01 -- -1.79 0.702 -- 24.98 505 12.8 7.72
273.07 0.775 6.86 1.58 3.8 -- -0.081 -- 0.00384 8.2 -- -- -- --
273.09 0.774 6.86 1.58 3.8 -- -- -- 0.00388 8.2 -- -- -- --
284.2 0.785 6.93 1.95 -- -3.55 -- -- 0.19 -- 19.38 427 12.4 9.41
294.06 0.799 6.87 -- 4.02 -0.83 -- -- -0.0434 7.76 20.5 122 17 18
1068.44 1.53 6.96 1.61 -- -- -- -- 0.0477 -- -- -- -- --
339.01 0.861 6.9 -- 3.81 -- -- -- -0.172 8.17 -- -- -- --
327.31 0.843 6.99 -- -- 3.76 -- -- -0.12 -- 0.5912 629 19.1 15.7
1136.86 1.57 7 -- -- -- -- -- -0.131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 217.59 temperature 20.0 90 > th dose independent rect. 17 18
2 218.86 temperature 20.0 10 > th dose independent rect. 18 18
4 221.48 temperature 20.0 270 > th dose independent rect. 15 19
19 224.91 wind 1.0 14400 > th dose dependent rect. 1 1
20 225.01 wind 3.0 14400 < th dose dependent rect. 1 1
21 225.06 wind 5.0 14400 < th dose dependent rect. 23 4
26 225.59 temperature 20.0 10 > th dose independent rect. 18 10
31 226.11 temperature 20.0 90 > th dose independent sin 9 NA
33 226.19 wind 3.0 14400 < th dose dependent rect. 23 7
34 226.23 wind 3.0 14400 < th dose independent rect. 23 3
48 226.50 wind 1.0 14400 > th dose dependent rect. 23 4
56 226.71 temperature 20.0 10 > th dose independent sin 9 NA
74 227.25 wind 3.0 14400 > th dose independent rect. 24 2
118 228.08 wind 3.0 14400 < th dose dependent rect. 4 2
129 228.28 precipitation 0.1 270 > th dose independent rect. 2 2
130 228.30 wind 3.0 14400 > th dose independent rect. 22 6
141 228.55 precipitation 0.1 270 > th dose dependent rect. 2 2
275 231.05 temperature 20.0 270 > th dose independent rect. 22 12
352 232.36 temperature 20.0 90 < th dose independent sin 9 NA
355 232.40 radiation 40.0 4320 > th dose dependent rect. 15 1
371 232.43 precipitation 0.1 14400 < th dose independent rect. 14 2
372 232.43 precipitation 0.1 14400 < th dose dependent rect. 14 2
379 232.50 temperature 20.0 10 < th dose independent sin 8 NA
392 232.66 temperature 20.0 270 > th dose independent rect. 15 12
402 232.83 precipitation 0.1 14400 > th dose independent rect. 9 7
407 232.87 humidity 80.0 1440 < th dose independent rect. 11 2
408 232.88 precipitation 0.1 14400 > th dose independent rect. 14 2
409 232.88 precipitation 0.1 14400 > th dose dependent rect. 14 2
410 232.89 precipitation 0.1 14400 > th dose independent rect. 7 9
418 232.93 precipitation 0.1 270 > th dose independent rect. 22 6
419 232.93 precipitation 0.1 14400 > th dose dependent rect. 7 9
437 233.18 humidity 80.0 14400 > th dose dependent rect. 13 1
447 233.28 temperature 20.0 90 < th dose independent rect. 21 10
457 233.40 precipitation 0.1 14400 < th dose independent rect. 7 9
458 233.40 precipitation 0.1 14400 > th dose independent rect. 6 11
460 233.40 precipitation 0.1 14400 < th dose dependent rect. 7 9
464 233.45 temperature 20.0 10 < th dose independent rect. 20 12
467 233.47 precipitation 0.1 14400 < th dose independent rect. 9 7
468 233.47 precipitation 0.1 14400 < th dose dependent rect. 9 7
469 233.48 precipitation 0.1 14400 < th dose independent rect. 6 11
472 233.48 precipitation 0.1 14400 < th dose dependent rect. 6 11
477 233.54 humidity 80.0 1440 > th dose independent rect. 11 2
482 233.56 temperature 20.0 90 < th dose independent rect. 20 15
489 233.61 temperature 20.0 10 < th dose independent rect. 20 16
514 233.80 temperature 30.0 90 < th dose dependent rect. 21 10
528 233.89 temperature 20.0 10 < th dose independent rect. 20 18
555 234.18 wind 1.0 14400 > th dose dependent rect. 4 2
561 234.21 temperature 20.0 90 < th dose independent rect. 20 18
611 234.56 precipitation 0.1 270 > th dose dependent rect. 23 5
631 234.72 humidity 90.0 14400 > th dose dependent rect. 16 1
632 234.73 radiation 1.0 1440 < th dose dependent rect. 7 9
653 234.92 wind 9.0 14400 > th dose independent rect. 10 1
659 234.95 wind 1.0 14400 > th dose independent rect. 4 3
695 235.25 wind 3.0 14400 < th dose dependent sin 9 NA
729 235.47 temperature 15.0 90 > th dose dependent rect. 17 18
730 235.48 humidity 80.0 14400 > th dose independent rect. 13 1
732 235.49 atmosphere 1005.0 720 < th dose independent rect. 20 1
740 235.52 precipitation 0.1 14400 > th dose independent rect. 17 1
756 235.63 temperature 20.0 10 < th dose independent rect. 18 18
767 235.76 temperature 20.0 10 < th dose independent rect. 18 14
774 235.80 wind 9.0 14400 < th dose independent rect. 10 1
776 235.80 temperature 20.0 10 < th dose independent rect. 18 20
779 235.80 temperature 15.0 10 > th dose dependent rect. 18 18
803 235.92 humidity 80.0 14400 > th dose dependent rect. 10 6
830 236.10 wind 3.0 14400 < th dose independent sin 9 NA
839 236.13 temperature 20.0 90 < th dose independent rect. 23 8
902 236.43 wind 3.0 14400 > th dose independent sin 9 NA
906 236.44 wind 9.0 14400 > th dose independent rect. 6 5
956 236.69 humidity 80.0 14400 > th dose independent rect. 10 1
957 236.69 temperature 20.0 90 < th dose independent rect. 17 21
978 236.78 humidity 80.0 14400 > th dose dependent rect. 10 1
995 236.89 wind 1.0 14400 > th dose dependent sin 9 NA