Os03g0574600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0574600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.29 | 0.667 | 9.67 | -4.67 | 2.6 | 0.679 | 1.74 | -4.96 | -1.05 | 6.32 | 20.5 | 1601 | -- | -- |
| 218.21 | 0.688 | 9.55 | -3.73 | 2.55 | 0.892 | 1.7 | -- | -0.915 | 6.34 | 13.37 | 17139 | -- | -- |
| 208.29 | 0.672 | 9.68 | -4.7 | 2.63 | 0.716 | -- | -5.17 | -1.08 | 6.37 | 20.8 | 1675 | -- | -- |
| 225.33 | 0.699 | 9.55 | -3.65 | 2.58 | 0.825 | -- | -- | -0.89 | 6.4 | 9.366 | 16997 | -- | -- |
| 532.21 | 1.08 | 9.58 | -3.52 | -- | -1.1 | -- | -5.76 | -0.554 | -- | 12.18 | 2829 | -- | -- |
| 227.96 | 0.708 | 9.47 | -3.04 | 2.57 | -- | 1.77 | -- | -0.547 | 6.31 | -- | -- | -- | -- |
| 235.68 | 0.719 | 9.47 | -3.02 | 2.58 | -- | -- | -- | -0.552 | 6.36 | -- | -- | -- | -- |
| 454.76 | 0.993 | 9.47 | -2.6 | -- | -2.11 | -- | -- | -0.298 | -- | 24.5 | 405 | -- | -- |
| 326.84 | 0.842 | 9.26 | -- | 2.56 | -1.9 | -- | -- | 0.394 | 6.3 | 16.21 | 47520 | -- | -- |
| 581.78 | 1.13 | 9.52 | -2.95 | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
| 475.54 | 1.02 | 9.39 | -- | 2.54 | -- | -- | -- | -0.216 | 6.42 | -- | -- | -- | -- |
| 627.3 | 1.17 | 9.4 | -- | -- | -2.49 | -- | -- | 0.0256 | -- | 24.3 | 443 | -- | -- |
| 811.18 | 1.33 | 9.44 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.32 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 2 | 192.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 6 | 193.31 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 12 | 193.59 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 15 | 193.88 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 59 | 196.12 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 60 | 196.12 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 125 | 198.04 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 129 | 198.16 | wind | 3.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 146 | 198.63 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 14 |
| 158 | 198.88 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 161 | 198.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 170 | 199.04 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 177 | 199.24 | wind | 3.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 182 | 199.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 193 | 199.45 | temperature | 25.0 | 270 | < th | dose independent | sin | 8 | NA |
| 197 | 199.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 214 | 199.81 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 242 | 200.34 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 243 | 200.39 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 247 | 200.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 249 | 200.50 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 257 | 200.65 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 260 | 200.66 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 262 | 200.74 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 277 | 201.02 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 282 | 201.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 292 | 201.16 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 11 |
| 294 | 201.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 295 | 201.21 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 301 | 201.24 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 302 | 201.25 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 308 | 201.28 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 318 | 201.34 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 336 | 201.45 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 338 | 201.46 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 341 | 201.47 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 351 | 201.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 358 | 201.56 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 377 | 201.60 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 386 | 201.62 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 403 | 201.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 426 | 201.72 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 435 | 201.74 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 451 | 201.78 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 504 | 201.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 510 | 201.93 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 524 | 201.96 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 573 | 202.04 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 574 | 202.04 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 600 | 202.08 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 612 | 202.09 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 665 | 202.16 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 717 | 202.23 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 767 | 202.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 775 | 202.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 778 | 202.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 787 | 202.31 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 818 | 202.35 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 854 | 202.40 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 886 | 202.45 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 896 | 202.46 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 897 | 202.46 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 901 | 202.47 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 905 | 202.48 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 920 | 202.49 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 969 | 202.53 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 982 | 202.54 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 992 | 202.55 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |