Os03g0573500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os03g0573500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.07 | 0.249 | 2.99 | 0.0586 | 0.105 | 0.674 | 0.241 | -1.87 | 0.0113 | 9.9 | 1013 | 7 | -- | -- |
| 29.39 | 0.254 | 2.99 | 0.0386 | 0.0972 | 0.653 | 0.347 | -- | 0.0151 | 10.3 | 1010 | 26 | -- | -- |
| 28.26 | 0.249 | 2.99 | 0.0682 | 0.108 | 0.652 | -- | -1.95 | 0.0111 | 9.06 | 1013 | 7 | -- | -- |
| 29.75 | 0.254 | 2.99 | 0.0505 | 0.0986 | 0.607 | -- | -- | 0.015 | 8.75 | 1010 | 121 | -- | -- |
| 28.93 | 0.25 | 2.99 | 0.0686 | -- | 0.615 | -- | -1.95 | 0.0116 | -- | 1013 | 9 | -- | -- |
| 32.03 | 0.265 | 3 | 0.0165 | 0.0932 | -- | 0.314 | -- | -0.00637 | 10.2 | -- | -- | -- | -- |
| 32.35 | 0.266 | 3 | 0.0275 | 0.101 | -- | -- | -- | -0.00658 | 8.8 | -- | -- | -- | -- |
| 30.33 | 0.257 | 2.99 | 0.0534 | -- | 0.605 | -- | -- | 0.0179 | -- | 1010 | 192 | -- | -- |
| 29.81 | 0.254 | 2.99 | -- | 0.106 | 0.63 | -- | -- | 0.00648 | 8.88 | 1011 | 195 | -- | -- |
| 32.93 | 0.268 | 3 | 0.0276 | -- | -- | -- | -- | -0.00581 | -- | -- | -- | -- | -- |
| 32.37 | 0.266 | 3 | -- | 0.101 | -- | -- | -- | -0.00964 | 8.78 | -- | -- | -- | -- |
| 30.4 | 0.257 | 2.99 | -- | -- | 0.598 | -- | -- | 0.0118 | -- | 1010 | 192 | -- | -- |
| 32.95 | 0.268 | 3 | -- | -- | -- | -- | -- | -0.00887 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.50 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 10 | 8 |
| 11 | 28.63 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 11 | 13 |
| 20 | 28.64 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 14 | 9 |
| 23 | 28.65 | atmosphere | 1015 | 720 | < th | dose independent | sin | 20 | NA |
| 25 | 28.66 | atmosphere | 1015 | 90 | < th | dose independent | sin | 14 | NA |
| 26 | 28.66 | atmosphere | 1015 | 10 | < th | dose independent | sin | 1 | NA |
| 27 | 28.66 | atmosphere | 1015 | 90 | < th | dose independent | sin | 2 | NA |
| 28 | 28.66 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 38 | 28.66 | atmosphere | 1010 | 90 | > th | dose dependent | sin | 18 | NA |
| 39 | 28.66 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 50 | 28.66 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 11 | 14 |
| 78 | 28.67 | atmosphere | 1015 | 10 | < th | dose independent | sin | 13 | NA |
| 81 | 28.67 | atmosphere | 1015 | 270 | < th | dose independent | sin | 16 | NA |
| 84 | 28.67 | humidity | 70 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 86 | 28.67 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 118 | 28.70 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 122 | 28.71 | atmosphere | 1015 | 720 | > th | dose independent | sin | 21 | NA |
| 126 | 28.71 | atmosphere | 1015 | 720 | > th | dose dependent | sin | 22 | NA |
| 133 | 28.71 | atmosphere | 1015 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 152 | 28.74 | atmosphere | 1015 | 720 | > th | dose independent | rect. | 3 | 21 |
| 167 | 28.75 | humidity | 50 | 4320 | < th | dose dependent | rect. | 9 | 3 |
| 178 | 28.75 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 203 | 28.76 | atmosphere | 1015 | 10 | > th | dose independent | sin | 7 | NA |
| 299 | 28.76 | atmosphere | 1015 | 10 | > th | dose independent | no | NA | NA |
| 305 | 28.76 | atmosphere | 1015 | 10 | < th | dose independent | no | NA | NA |
| 309 | 28.76 | atmosphere | 1015 | 270 | > th | dose independent | rect. | 20 | 1 |
| 316 | 28.76 | atmosphere | 1015 | 10 | > th | dose independent | rect. | 23 | 1 |